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Zinc in PDB 9ilz: The Cryo-Em Structure of Mpxv E5 in Complex with Ssdna

Zinc Binding Sites:

The binding sites of Zinc atom in the The Cryo-Em Structure of Mpxv E5 in Complex with Ssdna (pdb code 9ilz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Cryo-Em Structure of Mpxv E5 in Complex with Ssdna, PDB code: 9ilz:

Zinc binding site 1 out of 1 in 9ilz

Go back to Zinc Binding Sites List in 9ilz
Zinc binding site 1 out of 1 in the The Cryo-Em Structure of Mpxv E5 in Complex with Ssdna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of Mpxv E5 in Complex with Ssdna within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn801

b:262.6
occ:1.00
NE2 F:HIS290 2.1 203.1 1.0
SG F:CYS314 2.3 205.2 1.0
SG F:CYS285 2.3 212.5 1.0
SG F:CYS282 2.3 215.0 1.0
CE1 F:HIS290 2.9 201.2 1.0
N F:CYS285 3.0 210.5 1.0
CB F:CYS285 3.1 208.8 1.0
CD2 F:HIS290 3.1 201.8 1.0
CB F:CYS314 3.4 198.5 1.0
CA F:CYS285 3.4 209.3 1.0
O F:CYS285 3.5 211.2 1.0
CA F:CYS314 3.7 197.7 1.0
CB F:LEU284 3.7 208.8 1.0
C F:CYS285 3.8 210.2 1.0
C F:LEU284 4.0 208.7 1.0
CB F:CYS282 4.0 211.4 1.0
ND1 F:HIS290 4.0 201.1 1.0
CG F:HIS290 4.2 200.4 1.0
O F:SER313 4.2 187.8 1.0
CA F:LEU284 4.3 209.1 1.0
CG F:LEU284 4.5 208.2 1.0
N F:LYS315 4.6 178.2 1.0
N F:LEU284 4.6 209.4 1.0
CD1 F:LEU284 4.6 208.5 1.0
N F:CYS314 4.6 197.8 1.0
C F:CYS314 4.7 197.3 1.0
C F:SER313 4.8 189.0 1.0
O F:CYS282 4.9 212.4 1.0
NE2 F:HIS294 5.0 175.3 1.0

Reference:

Y.Cheng, P.Han, Q.Peng, R.Liu, H.Liu, B.Yuan, Y.Zhao, L.Kuai, J.Qi, K.Miao, Y.Shi, G.F.Gao, H.Wang. Assembly and Breakage of Head-to-Head Double Hexamer Reveals Mpox Virus E5-Catalyzed Dna Unwinding Initiation. Nat Commun V. 16 5176 2025.
ISSN: ESSN 2041-1723
PubMed: 40467608
DOI: 10.1038/S41467-025-60539-1
Page generated: Fri Aug 22 18:13:16 2025

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