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Zinc in PDB 9gjt: Structure of Nipah Virus Rna Polymerase Complex - Apo State

Enzymatic activity of Structure of Nipah Virus Rna Polymerase Complex - Apo State

All present enzymatic activity of Structure of Nipah Virus Rna Polymerase Complex - Apo State:
2.1.1.375; 2.7.7.48; 2.7.7.88;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Nipah Virus Rna Polymerase Complex - Apo State (pdb code 9gjt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Nipah Virus Rna Polymerase Complex - Apo State, PDB code: 9gjt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 9gjt

Go back to Zinc Binding Sites List in 9gjt
Zinc binding site 1 out of 2 in the Structure of Nipah Virus Rna Polymerase Complex - Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Nipah Virus Rna Polymerase Complex - Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2301

b:73.3
occ:1.00
NE2 A:HIS1423 2.1 51.5 1.0
ND1 A:HIS1421 2.1 41.7 1.0
SG A:CYS1239 2.3 68.1 1.0
SG A:CYS1236 2.3 55.8 1.0
CE1 A:HIS1423 2.6 48.1 1.0
CE1 A:HIS1421 3.0 43.0 1.0
CB A:CYS1236 3.1 62.5 1.0
CG A:HIS1421 3.1 35.3 1.0
CD2 A:HIS1423 3.4 43.3 1.0
CB A:HIS1421 3.4 29.3 1.0
CB A:CYS1239 3.7 70.1 1.0
N A:CYS1239 3.7 58.9 1.0
ND1 A:HIS1423 3.9 44.1 1.0
CA A:CYS1239 4.2 64.3 1.0
CD2 A:TYR1246 4.2 44.8 1.0
NE2 A:HIS1421 4.2 38.8 1.0
CD2 A:HIS1421 4.2 35.6 1.0
CG A:HIS1423 4.2 40.5 1.0
CE2 A:TYR1246 4.3 48.9 1.0
CG A:TYR1246 4.5 41.2 1.0
CA A:CYS1236 4.5 68.8 1.0
CB A:ILE1238 4.5 53.7 1.0
C A:ILE1238 4.6 63.2 1.0
CZ A:TYR1246 4.8 46.2 1.0
O A:ASN1243 4.8 62.5 1.0
CA A:HIS1421 4.9 29.4 1.0
CD1 A:TYR1246 4.9 39.8 1.0
CA A:ILE1238 5.0 59.8 1.0
CB A:TYR1246 5.0 46.6 1.0
N A:ILE1238 5.0 66.0 1.0

Zinc binding site 2 out of 2 in 9gjt

Go back to Zinc Binding Sites List in 9gjt
Zinc binding site 2 out of 2 in the Structure of Nipah Virus Rna Polymerase Complex - Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Nipah Virus Rna Polymerase Complex - Apo State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2302

b:120.2
occ:1.00
SG A:CYS1429 2.3 82.4 1.0
SG A:CYS1428 2.3 84.8 1.0
SG A:CYS1191 2.3 84.2 1.0
OE2 A:GLU1223 2.4 61.1 1.0
N A:CYS1429 2.8 87.7 1.0
CD A:GLU1223 3.3 59.1 1.0
CB A:CYS1191 3.4 63.5 1.0
CA A:CYS1429 3.4 82.2 1.0
CB A:CYS1429 3.5 79.9 1.0
C A:CYS1428 3.5 89.5 1.0
CB A:CYS1428 3.6 88.7 1.0
CA A:CYS1428 3.6 87.8 1.0
CG A:GLU1223 3.6 58.7 1.0
CA A:CYS1191 4.3 57.7 1.0
OE1 A:GLU1223 4.3 60.7 1.0
O A:CYS1428 4.6 92.6 1.0
O A:GLU1223 4.7 53.1 1.0
CB A:GLU1223 4.7 55.1 1.0
C A:CYS1429 4.9 79.8 1.0

Reference:

F.Sala, K.Ditter, O.Dybkov, H.Urlaub, H.S.Hillen. Structural Basis of Nipah Virus Rna Synthesis Nat Commun 2025.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-025-57219-5
Page generated: Fri Aug 22 17:55:09 2025

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