Zinc in PDB 9gd5: Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group

All present enzymatic activity of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group:
2.3.2.27;

The structure of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group, PDB code: 9gd5 was solved by M.A.Platt, E.Kot, S.J.Conway, L.Koekemoer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.45 / 1.68
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.9, 36.907, 129.363, 90, 110.04, 90
R / Rfree (%)	21 / 24

The binding sites of Zinc atom in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group (pdb code 9gd5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group, PDB code: 9gd5:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:22.3 occ:1.00 SG A:CYS870 2.3 22.4 1.0 SG A:CYS841 2.3 23.6 1.0 SG A:CYS844 2.4 22.7 1.0 SG A:CYS867 2.4 18.6 1.0 CB A:CYS841 3.2 20.2 1.0 CB A:CYS844 3.3 24.9 1.0 CB A:CYS870 3.3 17.3 1.0 CB A:CYS867 3.6 17.6 1.0 N A:CYS844 3.9 28.6 1.0 N A:CYS867 4.0 20.9 1.0 CA A:CYS844 4.1 26.6 1.0 N A:CYS870 4.1 17.1 1.0 O A:HOH1254 4.3 31.9 1.0 CA A:CYS867 4.3 19.2 1.0 CA A:CYS870 4.3 19.0 1.0 C A:LYS843 4.5 32.1 1.0 CB A:LYS843 4.6 34.5 1.0 CA A:CYS841 4.7 22.5 1.0 O A:CYS867 4.7 17.3 1.0 C A:CYS844 4.7 25.5 1.0 C A:CYS867 4.8 17.8 1.0 N A:LYS843 4.8 33.6 1.0 CB A:PHE869 4.8 16.9 1.0 O A:CYS844 4.9 26.9 1.0 CA A:LYS843 4.9 29.9 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1102 b:20.5 occ:1.00 ND1 A:HIS849 2.2 22.0 1.0 SG A:CYS829 2.3 20.9 1.0 SG A:CYS852 2.3 20.0 1.0 SG A:CYS832 2.4 20.0 1.0 CB A:CYS829 3.0 22.5 1.0 CE1 A:HIS849 3.1 24.8 1.0 CB A:CYS852 3.2 18.5 1.0 CG A:HIS849 3.2 24.4 1.0 CB A:CYS832 3.3 20.2 1.0 CB A:HIS849 3.6 23.3 1.0 N A:CYS832 3.8 22.9 1.0 N A:HIS849 4.1 22.6 1.0 CA A:CYS832 4.2 22.6 1.0 NE2 A:HIS849 4.2 24.0 1.0 CD2 A:HIS849 4.3 22.8 1.0 CA A:CYS829 4.4 21.1 1.0 CA A:HIS849 4.5 23.4 1.0 CB A:VAL831 4.6 20.3 1.0 CA A:CYS852 4.6 17.6 1.0 C A:CYS832 4.9 21.7 1.0 C A:VAL831 4.9 22.8 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:20.7 occ:1.00 ND1 B:HIS849 2.1 17.1 1.0 SG B:CYS852 2.3 20.2 1.0 SG B:CYS832 2.3 22.2 1.0 SG B:CYS829 2.3 21.0 1.0 CB B:CYS829 3.0 21.3 1.0 CE1 B:HIS849 3.0 21.3 1.0 CG B:HIS849 3.1 23.0 1.0 CB B:CYS852 3.2 16.3 1.0 CB B:CYS832 3.3 20.0 1.0 CB B:HIS849 3.5 20.6 1.0 N B:CYS832 3.9 18.4 1.0 N B:HIS849 4.0 20.0 1.0 CA B:CYS832 4.2 21.5 1.0 NE2 B:HIS849 4.2 21.5 1.0 CD2 B:HIS849 4.2 20.0 1.0 CA B:HIS849 4.4 20.8 1.0 CA B:CYS829 4.5 21.2 1.0 CA B:CYS852 4.6 16.5 1.0 CB B:VAL831 4.6 21.2 1.0 C B:CYS832 4.9 24.5 1.0 C B:VAL831 4.9 20.9 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1102 b:23.3 occ:1.00 SG B:CYS841 2.3 24.1 1.0 SG B:CYS844 2.3 22.5 1.0 SG B:CYS870 2.3 22.3 1.0 SG B:CYS867 2.4 17.8 1.0 CB B:CYS841 3.2 26.7 1.0 CB B:CYS844 3.3 26.0 1.0 CB B:CYS870 3.3 19.6 1.0 CB B:CYS867 3.5 20.2 1.0 N B:CYS844 3.8 27.7 1.0 N B:CYS867 4.0 19.9 1.0 CA B:CYS844 4.1 26.4 1.0 N B:CYS870 4.2 19.4 1.0 CA B:CYS867 4.2 19.3 1.0 CA B:CYS870 4.4 20.3 1.0 C B:LYS843 4.6 36.3 1.0 CA B:CYS841 4.6 26.6 1.0 CB B:LYS843 4.6 37.3 1.0 C B:CYS844 4.7 25.1 1.0 O B:CYS867 4.7 15.6 1.0 C B:CYS867 4.7 17.8 1.0 O B:CYS844 4.8 25.4 1.0 N B:LYS843 4.9 36.7 1.0 CB B:PHE869 4.9 17.3 1.0 CA B:LYS843 5.0 34.6 1.0

M.A.Platt, E.Kot, S.J.Conway, L.Koekemoer. Crystal Structure of Apo TRIM24 Phd-Brd in C121 Space Group To Be Published.