Zinc in PDB 8xu6: Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11

The structure of Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11, PDB code: 8xu6 was solved by X.Bai, Z.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.65 / 1.63
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	55.022, 55.022, 74.411, 90, 90, 120
R / Rfree (%)	18.1 / 22.7

The binding sites of Zinc atom in the Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11 (pdb code 8xu6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11, PDB code: 8xu6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:36.8 occ:1.00 SG A:CYS145 2.3 41.3 1.0 SG A:CYS115 2.3 34.1 1.0 SG A:CYS142 2.3 35.3 1.0 SG A:CYS118 2.4 40.2 1.0 HB2 A:CYS145 3.0 38.9 1.0 HB2 A:CYS115 3.1 34.5 1.0 CB A:CYS115 3.1 34.6 1.0 H A:CYS142 3.1 33.6 1.0 H A:CYS118 3.2 35.0 1.0 H A:CYS145 3.2 34.2 1.0 HB3 A:CYS118 3.2 39.1 1.0 HB3 A:CYS115 3.2 34.0 1.0 CB A:CYS145 3.2 37.3 1.0 HB3 A:CYS142 3.3 33.8 1.0 CB A:CYS118 3.4 38.8 1.0 CB A:CYS142 3.4 34.2 1.0 HB2 A:LEU117 3.8 39.8 1.0 N A:CYS118 3.8 33.7 1.0 HB3 A:CYS145 3.9 36.8 1.0 N A:CYS145 4.0 32.8 1.0 N A:CYS142 4.0 33.7 1.0 HB2 A:CYS118 4.2 38.2 1.0 CA A:CYS145 4.2 39.0 1.0 CA A:CYS118 4.2 38.8 1.0 HB2 A:CYS142 4.2 34.9 1.0 H A:LEU117 4.2 34.8 1.0 CA A:CYS142 4.2 33.2 1.0 HD2 A:ARG120 4.3 50.6 1.0 HB A:VAL144 4.3 43.0 1.0 HB2 A:ARG120 4.4 39.1 1.0 H A:ARG120 4.5 42.7 1.0 HA A:CYS145 4.6 37.0 1.0 CA A:CYS115 4.6 34.2 1.0 H A:PHE119 4.6 36.1 1.0 HA A:GLN141 4.7 40.7 1.0 HE1 A:TYR122 4.7 34.4 1.0 CB A:LEU117 4.8 40.0 1.0 C A:LEU117 4.8 35.1 1.0 C A:CYS142 4.8 33.4 1.0 HA A:CYS115 4.8 34.1 1.0 O A:HOH313 4.9 61.9 1.0 O A:CYS142 4.9 35.5 1.0 C A:CYS118 4.9 38.0 1.0 H A:VAL144 4.9 35.8 1.0 N A:LEU117 5.0 35.5 1.0

Zinc binding site 2 out of 2 in the Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:41.0 occ:1.00 SG A:CYS106 2.3 42.4 1.0 SG A:CYS103 2.4 34.9 1.0 HB3 A:CYS103 2.8 35.1 1.0 H A:CYS106 3.0 42.3 1.0 CB A:CYS103 3.0 35.9 1.0 HB3 A:CYS106 3.0 48.3 1.0 CB A:CYS106 3.3 51.9 1.0 HB2 A:CYS103 3.3 36.4 1.0 N A:CYS106 3.7 40.6 1.0 HB3 A:GLU105 3.8 39.6 1.0 HB2 A:CYS106 4.1 50.9 1.0 CA A:CYS106 4.1 42.3 1.0 H A:GLU105 4.4 38.2 1.0 CA A:CYS103 4.5 33.8 1.0 H A:LEU108 4.7 46.1 1.0 CB A:GLU105 4.7 39.2 1.0 C A:GLU105 4.7 41.9 1.0 O A:CYS103 4.7 39.1 1.0 C A:CYS103 4.8 34.3 1.0 HA A:CYS106 4.8 42.8 1.0 H A:HIS107 4.8 44.2 1.0 HB2 A:LEU108 4.9 48.2 1.0 HA A:CYS103 4.9 34.4 1.0 N A:GLU105 5.0 36.4 1.0 C A:CYS106 5.0 45.3 1.0

X.Bai, Z.Chen. Study on Zinc Finger Structure and Function of Tumor Suppressor ZMYND11 To Be Published.