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Zinc in PDB 8xp5: The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus.

Protein crystallography data

The structure of The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus., PDB code: 8xp5 was solved by F.Wang, W.Cheng, Z.Yuan, D.Lin, C.Bao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.36 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.976, 68.437, 77.055, 90, 112.36, 90
R / Rfree (%) 25.5 / 32.8

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus. (pdb code 8xp5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus., PDB code: 8xp5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8xp5

Go back to Zinc Binding Sites List in 8xp5
Zinc binding site 1 out of 2 in the The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:28.4
occ:1.00
ND1 A:HIS245 2.0 28.0 1.0
SG A:CYS242 2.3 27.2 1.0
SG A:CYS308 2.3 29.1 1.0
SG A:CYS304 2.3 28.2 1.0
CE1 A:HIS245 2.9 28.5 1.0
CG A:HIS245 3.0 28.7 1.0
CB A:CYS308 3.3 30.6 1.0
CB A:HIS245 3.4 30.0 1.0
CB A:CYS242 3.4 28.1 1.0
CB A:CYS304 3.5 27.1 1.0
CA A:CYS304 3.7 26.3 1.0
N A:ASN305 4.0 25.0 1.0
NE2 A:HIS245 4.0 28.7 1.0
CD2 A:HIS245 4.1 28.5 1.0
N A:CYS242 4.2 28.6 1.0
CA A:CYS242 4.4 29.1 1.0
C A:CYS304 4.4 25.2 1.0
N A:HIS245 4.5 31.4 1.0
CA A:HIS245 4.6 31.0 1.0
CA A:CYS308 4.7 31.7 1.0
O A:MET303 4.7 23.7 1.0
O A:CYS242 4.7 31.1 1.0
C A:CYS242 4.9 30.2 1.0
N A:CYS304 5.0 25.7 1.0

Zinc binding site 2 out of 2 in 8xp5

Go back to Zinc Binding Sites List in 8xp5
Zinc binding site 2 out of 2 in the The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:17.2
occ:1.00
ND1 B:HIS245 2.1 16.4 1.0
SG B:CYS308 2.3 21.4 1.0
SG B:CYS242 2.3 16.8 1.0
SG B:CYS304 2.3 15.8 1.0
CE1 B:HIS245 3.0 16.5 1.0
CG B:HIS245 3.1 16.6 1.0
CB B:CYS308 3.2 22.6 1.0
CB B:CYS242 3.4 16.8 1.0
CB B:HIS245 3.5 17.1 1.0
CB B:CYS304 3.6 16.2 1.0
CA B:CYS304 3.8 16.4 1.0
N B:CYS242 3.9 17.4 1.0
O B:HOH553 4.1 13.7 1.0
NE2 B:HIS245 4.2 16.5 1.0
CA B:CYS242 4.2 17.2 1.0
CD2 B:HIS245 4.2 16.4 1.0
N B:ASN305 4.5 18.4 1.0
O B:CYS242 4.5 17.4 1.0
N B:HIS245 4.5 16.7 1.0
C B:CYS304 4.5 17.5 1.0
CA B:CYS308 4.6 23.5 1.0
CA B:HIS245 4.6 17.5 1.0
C B:CYS242 4.7 17.0 1.0
O B:MET303 4.8 14.6 1.0
O B:ASN305 4.9 19.4 1.0

Reference:

F.Wang, W.Cheng, Z.Yuan, D.Lin, C.Bao. The Crystal Structure of P53/Bcl-Xl Fusion Complex From Biortus. To Be Published.
Page generated: Fri Aug 22 15:37:06 2025

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