Zinc in PDB 8x78: Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
Protein crystallography data
The structure of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae, PDB code: 8x78
was solved by
X.H.Li,
D.Su,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.96 /
2.36
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
142.588,
87.671,
159.239,
90,
115.79,
90
|
|
R / Rfree (%)
|
16.8 /
22.3
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
(pdb code 8x78). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae, PDB code: 8x78:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 1 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn402
b:54.7
occ:1.00
|
O
|
L:HOH502
|
1.9
|
50.2
|
1.0
|
|
NE2
|
L:HIS112
|
2.2
|
47.3
|
1.0
|
|
NE2
|
L:HIS263
|
2.3
|
59.3
|
1.0
|
|
OD2
|
L:ASP217
|
2.3
|
50.5
|
1.0
|
|
OD2
|
L:ASP111
|
2.6
|
52.4
|
1.0
|
|
O2
|
L:GOL401
|
2.8
|
65.7
|
1.0
|
|
OD1
|
L:ASP217
|
2.9
|
43.7
|
1.0
|
|
CG
|
L:ASP217
|
2.9
|
63.9
|
1.0
|
|
HO2
|
L:GOL401
|
3.0
|
78.8
|
1.0
|
|
CD2
|
L:HIS112
|
3.0
|
45.3
|
1.0
|
|
CE1
|
L:HIS263
|
3.2
|
65.6
|
1.0
|
|
CD2
|
L:HIS263
|
3.3
|
55.9
|
1.0
|
|
CE1
|
L:HIS112
|
3.3
|
57.6
|
1.0
|
|
CG
|
L:ASP111
|
3.4
|
54.8
|
1.0
|
|
OD1
|
L:ASP111
|
3.5
|
48.3
|
1.0
|
|
ZN
|
L:ZN403
|
3.6
|
30.0
|
1.0
|
|
C2
|
L:GOL401
|
4.0
|
71.0
|
1.0
|
|
H31
|
L:GOL401
|
4.2
|
79.5
|
1.0
|
|
NE2
|
L:HIS107
|
4.2
|
52.5
|
1.0
|
|
CG
|
L:HIS112
|
4.2
|
54.0
|
1.0
|
|
CE1
|
L:HIS107
|
4.3
|
39.7
|
1.0
|
|
H32
|
L:GOL401
|
4.3
|
79.5
|
1.0
|
|
ND1
|
L:HIS112
|
4.4
|
48.3
|
1.0
|
|
ND1
|
L:HIS263
|
4.4
|
59.2
|
1.0
|
|
H12
|
L:GOL401
|
4.4
|
74.1
|
1.0
|
|
CB
|
L:ASP217
|
4.4
|
44.9
|
1.0
|
|
H11
|
L:GOL401
|
4.4
|
74.1
|
1.0
|
|
CE1
|
L:TYR220
|
4.4
|
52.9
|
1.0
|
|
CG
|
L:HIS263
|
4.4
|
62.8
|
1.0
|
|
C3
|
L:GOL401
|
4.4
|
66.3
|
1.0
|
|
C1
|
L:GOL401
|
4.6
|
61.7
|
1.0
|
|
O
|
L:HOH507
|
4.6
|
45.3
|
1.0
|
|
H2
|
L:GOL401
|
4.7
|
85.2
|
1.0
|
|
CB
|
L:ASP111
|
4.8
|
52.5
|
1.0
|
|
ND1
|
L:HIS109
|
5.0
|
46.8
|
1.0
|
|
Zinc binding site 2 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 2 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn403
b:30.0
occ:1.00
|
ND1
|
L:HIS109
|
1.9
|
46.8
|
1.0
|
|
OD2
|
L:ASP217
|
2.3
|
50.5
|
1.0
|
|
NE2
|
L:HIS196
|
2.3
|
55.2
|
1.0
|
|
NE2
|
L:HIS107
|
2.6
|
52.5
|
1.0
|
|
CE1
|
L:HIS109
|
2.6
|
50.5
|
1.0
|
|
O
|
L:HOH502
|
2.9
|
50.2
|
1.0
|
|
CG
|
L:HIS109
|
3.2
|
53.2
|
1.0
|
|
CD2
|
L:HIS196
|
3.2
|
42.5
|
1.0
|
|
CG
|
L:ASP217
|
3.2
|
63.9
|
1.0
|
|
CE1
|
L:HIS196
|
3.3
|
48.4
|
1.0
|
|
CD2
|
L:HIS107
|
3.4
|
44.5
|
1.0
|
|
CB
|
L:ASP217
|
3.6
|
44.9
|
1.0
|
|
ZN
|
L:ZN402
|
3.6
|
54.7
|
1.0
|
|
OH
|
L:TYR220
|
3.6
|
61.0
|
1.0
|
|
CE1
|
L:HIS107
|
3.7
|
39.7
|
1.0
|
|
CB
|
L:HIS109
|
3.8
|
44.3
|
1.0
|
|
NE2
|
L:HIS109
|
3.9
|
44.9
|
1.0
|
|
H12
|
L:GOL401
|
4.0
|
74.1
|
1.0
|
|
O2
|
L:GOL401
|
4.0
|
65.7
|
1.0
|
|
CD2
|
L:HIS109
|
4.1
|
38.2
|
1.0
|
|
OD1
|
L:ASP217
|
4.3
|
43.7
|
1.0
|
|
CE1
|
L:TYR220
|
4.3
|
52.9
|
1.0
|
|
CG
|
L:HIS196
|
4.3
|
48.1
|
1.0
|
|
ND1
|
L:HIS196
|
4.3
|
54.1
|
1.0
|
|
CZ
|
L:TYR220
|
4.4
|
55.9
|
1.0
|
|
HO2
|
L:GOL401
|
4.4
|
78.8
|
1.0
|
|
CG
|
L:HIS107
|
4.7
|
40.4
|
1.0
|
|
NE2
|
L:HIS112
|
4.7
|
47.3
|
1.0
|
|
ND1
|
L:HIS107
|
4.7
|
41.6
|
1.0
|
|
CD2
|
L:HIS112
|
4.7
|
45.3
|
1.0
|
|
OD1
|
L:ASP111
|
4.8
|
48.3
|
1.0
|
|
C1
|
L:GOL401
|
4.8
|
61.7
|
1.0
|
|
H11
|
L:GOL401
|
5.0
|
74.1
|
1.0
|
|
Zinc binding site 3 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 3 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn402
b:66.2
occ:1.00
|
CE1
|
K:HIS112
|
1.7
|
64.2
|
1.0
|
|
OD2
|
K:ASP217
|
2.3
|
78.8
|
1.0
|
|
O1
|
K:GOL401
|
2.3
|
64.7
|
1.0
|
|
NE2
|
K:HIS263
|
2.3
|
84.4
|
1.0
|
|
OD2
|
K:ASP111
|
2.5
|
85.7
|
1.0
|
|
ND1
|
K:HIS112
|
2.5
|
60.5
|
1.0
|
|
HO1
|
K:GOL401
|
2.6
|
77.6
|
1.0
|
|
NE2
|
K:HIS112
|
2.9
|
73.4
|
1.0
|
|
CG
|
K:ASP217
|
3.1
|
62.8
|
1.0
|
|
CD2
|
K:HIS263
|
3.2
|
78.5
|
1.0
|
|
OD1
|
K:ASP217
|
3.2
|
73.7
|
1.0
|
|
CG
|
K:ASP111
|
3.2
|
71.2
|
1.0
|
|
OD1
|
K:ASP111
|
3.2
|
70.7
|
1.0
|
|
CE1
|
K:HIS263
|
3.3
|
74.4
|
1.0
|
|
C1
|
K:GOL401
|
3.5
|
76.8
|
1.0
|
|
ZN
|
K:ZN403
|
3.7
|
76.9
|
1.0
|
|
H11
|
K:GOL401
|
3.7
|
92.2
|
1.0
|
|
CG
|
K:HIS112
|
3.8
|
62.2
|
1.0
|
|
CD2
|
K:HIS112
|
3.9
|
62.3
|
1.0
|
|
H12
|
K:GOL401
|
3.9
|
92.2
|
1.0
|
|
NE2
|
K:HIS107
|
4.1
|
57.6
|
1.0
|
|
CE1
|
K:HIS107
|
4.2
|
52.6
|
1.0
|
|
CG
|
K:HIS263
|
4.3
|
80.7
|
1.0
|
|
ND1
|
K:HIS263
|
4.3
|
80.2
|
1.0
|
|
H32
|
K:GOL401
|
4.4
|
102.7
|
1.0
|
|
CB
|
K:ASP217
|
4.5
|
58.1
|
1.0
|
|
H2
|
K:GOL401
|
4.5
|
102.0
|
1.0
|
|
C2
|
K:GOL401
|
4.6
|
85.0
|
1.0
|
|
CB
|
K:ASP111
|
4.7
|
67.0
|
1.0
|
|
CE1
|
K:TYR220
|
4.8
|
64.6
|
1.0
|
|
Zinc binding site 4 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 4 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn403
b:76.9
occ:1.00
|
CE1
|
K:HIS196
|
2.2
|
66.2
|
1.0
|
|
NE2
|
K:HIS107
|
2.3
|
57.6
|
1.0
|
|
ND1
|
K:HIS109
|
2.3
|
63.9
|
1.0
|
|
OD2
|
K:ASP217
|
2.4
|
78.8
|
1.0
|
|
ND1
|
K:HIS196
|
2.6
|
55.2
|
1.0
|
|
CD2
|
K:HIS107
|
3.0
|
46.8
|
1.0
|
|
HO1
|
K:GOL401
|
3.1
|
77.6
|
1.0
|
|
CE1
|
K:HIS109
|
3.1
|
59.9
|
1.0
|
|
CG
|
K:ASP217
|
3.3
|
62.8
|
1.0
|
|
CE1
|
K:HIS107
|
3.4
|
52.6
|
1.0
|
|
CG
|
K:HIS109
|
3.4
|
59.8
|
1.0
|
|
NE2
|
K:HIS196
|
3.4
|
61.8
|
1.0
|
|
CB
|
K:ASP217
|
3.5
|
58.1
|
1.0
|
|
ZN
|
K:ZN402
|
3.7
|
66.2
|
1.0
|
|
O1
|
K:GOL401
|
3.7
|
64.7
|
1.0
|
|
CB
|
K:HIS109
|
3.8
|
50.2
|
1.0
|
|
CG
|
K:HIS196
|
3.9
|
63.7
|
1.0
|
|
CG
|
K:HIS107
|
4.2
|
46.0
|
1.0
|
|
NE2
|
K:HIS109
|
4.3
|
63.1
|
1.0
|
|
H12
|
K:GOL401
|
4.3
|
92.2
|
1.0
|
|
CD2
|
K:HIS196
|
4.3
|
52.7
|
1.0
|
|
OH
|
K:TYR220
|
4.3
|
78.2
|
1.0
|
|
ND1
|
K:HIS107
|
4.3
|
53.8
|
1.0
|
|
ND1
|
K:HIS112
|
4.4
|
60.5
|
1.0
|
|
CE1
|
K:HIS112
|
4.4
|
64.2
|
1.0
|
|
CD2
|
K:HIS109
|
4.4
|
55.3
|
1.0
|
|
OD1
|
K:ASP217
|
4.4
|
73.7
|
1.0
|
|
CE1
|
K:TYR220
|
4.6
|
64.6
|
1.0
|
|
C1
|
K:GOL401
|
4.6
|
76.8
|
1.0
|
|
OG
|
K:SER156
|
4.7
|
87.3
|
1.0
|
|
OD1
|
K:ASP111
|
4.8
|
70.7
|
1.0
|
|
CZ
|
K:TYR220
|
4.9
|
63.5
|
1.0
|
|
Zinc binding site 5 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 5 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn402
b:58.9
occ:1.00
|
O
|
G:HOH501
|
2.0
|
45.4
|
1.0
|
|
NE2
|
G:HIS112
|
2.3
|
53.7
|
1.0
|
|
NE2
|
G:HIS263
|
2.3
|
65.5
|
1.0
|
|
OD2
|
G:ASP217
|
2.3
|
57.9
|
1.0
|
|
OD2
|
G:ASP111
|
2.4
|
70.0
|
1.0
|
|
CG
|
G:ASP217
|
3.0
|
54.0
|
1.0
|
|
OD1
|
G:ASP217
|
3.0
|
51.5
|
1.0
|
|
CD2
|
G:HIS112
|
3.1
|
48.2
|
1.0
|
|
CD2
|
G:HIS263
|
3.1
|
57.5
|
1.0
|
|
CE1
|
G:HIS263
|
3.3
|
58.9
|
1.0
|
|
HO3
|
G:GOL401
|
3.3
|
64.7
|
1.0
|
|
CG
|
G:ASP111
|
3.3
|
56.0
|
1.0
|
|
CE1
|
G:HIS112
|
3.4
|
61.4
|
1.0
|
|
ZN
|
G:ZN403
|
3.4
|
65.2
|
1.0
|
|
OD1
|
G:ASP111
|
3.5
|
64.4
|
1.0
|
|
HO1
|
G:GOL401
|
3.9
|
82.7
|
1.0
|
|
O3
|
G:GOL401
|
4.1
|
53.9
|
1.0
|
|
H31
|
G:GOL401
|
4.2
|
89.1
|
1.0
|
|
O1
|
G:GOL401
|
4.3
|
68.9
|
1.0
|
|
CG
|
G:HIS112
|
4.3
|
58.4
|
1.0
|
|
NE2
|
G:HIS107
|
4.3
|
47.9
|
1.0
|
|
CG
|
G:HIS263
|
4.3
|
63.7
|
1.0
|
|
ND1
|
G:HIS263
|
4.4
|
59.4
|
1.0
|
|
CE1
|
G:HIS107
|
4.4
|
40.8
|
1.0
|
|
ND1
|
G:HIS112
|
4.4
|
57.4
|
1.0
|
|
CB
|
G:ASP217
|
4.5
|
52.5
|
1.0
|
|
CE1
|
G:TYR220
|
4.6
|
54.5
|
1.0
|
|
C3
|
G:GOL401
|
4.6
|
74.2
|
1.0
|
|
CB
|
G:ASP111
|
4.7
|
57.2
|
1.0
|
|
Zinc binding site 6 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 6 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn403
b:65.2
occ:1.00
|
OD2
|
G:ASP217
|
2.0
|
57.9
|
1.0
|
|
ND1
|
G:HIS109
|
2.3
|
43.0
|
1.0
|
|
NE2
|
G:HIS107
|
2.3
|
47.9
|
1.0
|
|
CE1
|
G:HIS196
|
2.6
|
44.4
|
1.0
|
|
O
|
G:HOH501
|
2.7
|
45.4
|
1.0
|
|
CG
|
G:ASP217
|
3.1
|
54.0
|
1.0
|
|
CE1
|
G:HIS109
|
3.1
|
48.9
|
1.0
|
|
CD2
|
G:HIS107
|
3.2
|
39.9
|
1.0
|
|
CG
|
G:HIS109
|
3.3
|
52.8
|
1.0
|
|
CE1
|
G:HIS107
|
3.4
|
40.8
|
1.0
|
|
ZN
|
G:ZN402
|
3.4
|
58.9
|
1.0
|
|
NE2
|
G:HIS196
|
3.5
|
48.6
|
1.0
|
|
ND1
|
G:HIS196
|
3.5
|
46.6
|
1.0
|
|
CB
|
G:ASP217
|
3.6
|
52.5
|
1.0
|
|
CB
|
G:HIS109
|
3.7
|
42.3
|
1.0
|
|
HO3
|
G:GOL401
|
4.2
|
64.7
|
1.0
|
|
OD1
|
G:ASP217
|
4.2
|
51.5
|
1.0
|
|
OH
|
G:TYR220
|
4.2
|
67.3
|
1.0
|
|
NE2
|
G:HIS109
|
4.3
|
54.7
|
1.0
|
|
NE2
|
G:HIS112
|
4.3
|
53.7
|
1.0
|
|
CD2
|
G:HIS112
|
4.4
|
48.2
|
1.0
|
|
CD2
|
G:HIS109
|
4.4
|
53.2
|
1.0
|
|
CG
|
G:HIS107
|
4.4
|
39.7
|
1.0
|
|
ND1
|
G:HIS107
|
4.4
|
40.3
|
1.0
|
|
O3
|
G:GOL401
|
4.4
|
53.9
|
1.0
|
|
CE1
|
G:TYR220
|
4.6
|
54.5
|
1.0
|
|
OD1
|
G:ASP111
|
4.6
|
64.4
|
1.0
|
|
CD2
|
G:HIS196
|
4.7
|
52.7
|
1.0
|
|
CG
|
G:HIS196
|
4.7
|
54.2
|
1.0
|
|
CZ
|
G:TYR220
|
4.9
|
58.6
|
1.0
|
|
Zinc binding site 7 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 7 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn401
b:66.3
occ:1.00
|
O
|
H:HOH503
|
2.2
|
66.3
|
1.0
|
|
NE2
|
H:HIS263
|
2.3
|
52.0
|
1.0
|
|
NE2
|
H:HIS112
|
2.3
|
61.2
|
1.0
|
|
OD2
|
H:ASP217
|
2.3
|
54.0
|
1.0
|
|
OD2
|
H:ASP111
|
2.5
|
82.6
|
1.0
|
|
CE1
|
H:HIS263
|
3.0
|
59.8
|
1.0
|
|
CG
|
H:ASP217
|
3.1
|
56.9
|
1.0
|
|
CD2
|
H:HIS112
|
3.1
|
58.0
|
1.0
|
|
OD1
|
H:ASP217
|
3.2
|
58.7
|
1.0
|
|
CG
|
H:ASP111
|
3.3
|
69.8
|
1.0
|
|
OD1
|
H:ASP111
|
3.4
|
67.1
|
1.0
|
|
CE1
|
H:HIS112
|
3.4
|
65.6
|
1.0
|
|
CD2
|
H:HIS263
|
3.4
|
59.7
|
1.0
|
|
ZN
|
H:ZN402
|
3.6
|
69.5
|
1.0
|
|
H11
|
H:GOL403
|
3.9
|
30.0
|
1.0
|
|
H32
|
H:GOL403
|
4.0
|
30.0
|
1.0
|
|
O2
|
H:GOL403
|
4.0
|
30.0
|
1.0
|
|
H31
|
H:GOL403
|
4.1
|
30.0
|
1.0
|
|
ND1
|
H:HIS263
|
4.2
|
58.9
|
1.0
|
|
HO2
|
H:GOL403
|
4.2
|
30.0
|
1.0
|
|
NE2
|
H:HIS107
|
4.2
|
50.1
|
1.0
|
|
CG
|
H:HIS112
|
4.3
|
64.2
|
1.0
|
|
CG
|
H:HIS263
|
4.4
|
61.1
|
1.0
|
|
C3
|
H:GOL403
|
4.4
|
30.0
|
1.0
|
|
ND1
|
H:HIS112
|
4.4
|
69.0
|
1.0
|
|
O
|
H:HOH504
|
4.5
|
58.7
|
1.0
|
|
CB
|
H:ASP217
|
4.5
|
51.3
|
1.0
|
|
CE1
|
H:HIS107
|
4.5
|
52.0
|
1.0
|
|
CE1
|
H:TYR220
|
4.6
|
64.8
|
1.0
|
|
C2
|
H:GOL403
|
4.6
|
30.0
|
1.0
|
|
C1
|
H:GOL403
|
4.7
|
30.0
|
1.0
|
|
CB
|
H:ASP111
|
4.7
|
60.4
|
1.0
|
|
H12
|
H:GOL403
|
5.0
|
30.0
|
1.0
|
|
Zinc binding site 8 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 8 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn402
b:69.5
occ:1.00
|
CE1
|
H:HIS196
|
2.2
|
59.2
|
1.0
|
|
ND1
|
H:HIS109
|
2.3
|
54.4
|
1.0
|
|
NE2
|
H:HIS107
|
2.3
|
50.1
|
1.0
|
|
OD2
|
H:ASP217
|
2.4
|
54.0
|
1.0
|
|
ND1
|
H:HIS196
|
2.6
|
49.5
|
1.0
|
|
O
|
H:HOH503
|
2.8
|
66.3
|
1.0
|
|
O
|
H:HOH504
|
2.9
|
58.7
|
1.0
|
|
CD2
|
H:HIS107
|
3.0
|
51.8
|
1.0
|
|
CE1
|
H:HIS109
|
3.1
|
51.5
|
1.0
|
|
CG
|
H:HIS109
|
3.3
|
58.7
|
1.0
|
|
CG
|
H:ASP217
|
3.3
|
56.9
|
1.0
|
|
CE1
|
H:HIS107
|
3.4
|
52.0
|
1.0
|
|
NE2
|
H:HIS196
|
3.4
|
64.0
|
1.0
|
|
CB
|
H:ASP217
|
3.5
|
51.3
|
1.0
|
|
ZN
|
H:ZN401
|
3.6
|
66.3
|
1.0
|
|
CB
|
H:HIS109
|
3.7
|
52.7
|
1.0
|
|
CG
|
H:HIS196
|
3.9
|
55.1
|
1.0
|
|
NE2
|
H:HIS109
|
4.2
|
67.8
|
1.0
|
|
CG
|
H:HIS107
|
4.2
|
50.0
|
1.0
|
|
CD2
|
H:HIS196
|
4.3
|
57.9
|
1.0
|
|
NE2
|
H:HIS112
|
4.3
|
61.2
|
1.0
|
|
CD2
|
H:HIS109
|
4.3
|
53.1
|
1.0
|
|
OH
|
H:TYR220
|
4.4
|
64.0
|
1.0
|
|
ND1
|
H:HIS107
|
4.4
|
56.0
|
1.0
|
|
OD1
|
H:ASP217
|
4.5
|
58.7
|
1.0
|
|
CD2
|
H:HIS112
|
4.5
|
58.0
|
1.0
|
|
CE1
|
H:TYR220
|
4.7
|
64.8
|
1.0
|
|
HO2
|
H:GOL403
|
4.7
|
30.0
|
1.0
|
|
OD1
|
H:ASP111
|
4.8
|
67.1
|
1.0
|
|
CZ
|
H:TYR220
|
5.0
|
67.3
|
1.0
|
|
H11
|
H:GOL403
|
5.0
|
30.0
|
1.0
|
|
Zinc binding site 9 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 9 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn402
b:60.1
occ:1.00
|
O
|
I:HOH501
|
2.2
|
30.0
|
1.0
|
|
NE2
|
I:HIS263
|
2.2
|
59.3
|
1.0
|
|
NE2
|
I:HIS112
|
2.3
|
62.0
|
1.0
|
|
OD2
|
I:ASP217
|
2.3
|
57.6
|
1.0
|
|
OD2
|
I:ASP111
|
2.7
|
69.8
|
1.0
|
|
OD1
|
I:ASP217
|
2.9
|
57.5
|
1.0
|
|
CG
|
I:ASP217
|
2.9
|
59.7
|
1.0
|
|
CD2
|
I:HIS112
|
3.1
|
52.7
|
1.0
|
|
CD2
|
I:HIS263
|
3.2
|
56.6
|
1.0
|
|
CE1
|
I:HIS263
|
3.2
|
56.9
|
1.0
|
|
CE1
|
I:HIS112
|
3.3
|
64.1
|
1.0
|
|
CG
|
I:ASP111
|
3.5
|
64.8
|
1.0
|
|
OD1
|
I:ASP111
|
3.7
|
63.2
|
1.0
|
|
ZN
|
I:ZN403
|
3.7
|
72.3
|
1.0
|
|
H32
|
I:GOL401
|
3.7
|
77.5
|
1.0
|
|
H31
|
I:GOL401
|
4.1
|
77.5
|
1.0
|
|
C3
|
I:GOL401
|
4.2
|
64.6
|
1.0
|
|
O3
|
I:GOL401
|
4.2
|
58.8
|
1.0
|
|
CG
|
I:HIS112
|
4.3
|
56.7
|
1.0
|
|
ND1
|
I:HIS263
|
4.3
|
60.6
|
1.0
|
|
CG
|
I:HIS263
|
4.3
|
60.8
|
1.0
|
|
CB
|
I:ASP217
|
4.3
|
59.9
|
1.0
|
|
NE2
|
I:HIS107
|
4.3
|
51.2
|
1.0
|
|
CE1
|
I:TYR220
|
4.4
|
47.0
|
1.0
|
|
ND1
|
I:HIS112
|
4.4
|
67.6
|
1.0
|
|
CE1
|
I:HIS107
|
4.4
|
49.6
|
1.0
|
|
HO3
|
I:GOL401
|
4.7
|
70.6
|
1.0
|
|
CB
|
I:ASP111
|
4.8
|
59.3
|
1.0
|
|
CD1
|
I:TYR220
|
5.0
|
52.5
|
1.0
|
|
Zinc binding site 10 out
of 24 in 8x78
Go back to
Zinc Binding Sites List in 8x78
Zinc binding site 10 out
of 24 in the Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn403
b:72.3
occ:1.00
|
O
|
I:HOH501
|
2.1
|
30.0
|
1.0
|
|
CE1
|
I:HIS196
|
2.1
|
67.4
|
1.0
|
|
ND1
|
I:HIS109
|
2.4
|
49.7
|
1.0
|
|
NE2
|
I:HIS107
|
2.4
|
51.2
|
1.0
|
|
OD2
|
I:ASP217
|
2.4
|
57.6
|
1.0
|
|
NE2
|
I:HIS196
|
2.5
|
53.5
|
1.0
|
|
CE1
|
I:HIS109
|
3.2
|
49.0
|
1.0
|
|
CD2
|
I:HIS107
|
3.2
|
46.8
|
1.0
|
|
ND1
|
I:HIS196
|
3.3
|
58.0
|
1.0
|
|
CG
|
I:ASP217
|
3.3
|
59.7
|
1.0
|
|
CE1
|
I:HIS107
|
3.4
|
49.6
|
1.0
|
|
CG
|
I:HIS109
|
3.4
|
56.4
|
1.0
|
|
CB
|
I:ASP217
|
3.5
|
59.9
|
1.0
|
|
ZN
|
I:ZN402
|
3.7
|
60.1
|
1.0
|
|
CD2
|
I:HIS196
|
3.7
|
46.3
|
1.0
|
|
CB
|
I:HIS109
|
3.8
|
55.2
|
1.0
|
|
O3
|
I:GOL401
|
4.0
|
58.8
|
1.0
|
|
OH
|
I:TYR220
|
4.0
|
65.5
|
1.0
|
|
CG
|
I:HIS196
|
4.1
|
53.1
|
1.0
|
|
HO3
|
I:GOL401
|
4.2
|
70.6
|
1.0
|
|
CE1
|
I:TYR220
|
4.3
|
47.0
|
1.0
|
|
OD1
|
I:ASP217
|
4.3
|
57.5
|
1.0
|
|
CG
|
I:HIS107
|
4.4
|
48.6
|
1.0
|
|
NE2
|
I:HIS109
|
4.4
|
49.0
|
1.0
|
|
ND1
|
I:HIS107
|
4.4
|
46.3
|
1.0
|
|
NE2
|
I:HIS112
|
4.4
|
62.0
|
1.0
|
|
CD2
|
I:HIS112
|
4.5
|
52.7
|
1.0
|
|
CD2
|
I:HIS109
|
4.5
|
49.6
|
1.0
|
|
CZ
|
I:TYR220
|
4.6
|
52.5
|
1.0
|
|
OD1
|
I:ASP111
|
4.8
|
63.2
|
1.0
|
|
C3
|
I:GOL401
|
5.0
|
64.6
|
1.0
|
|
Reference:
X.H.Li,
D.Su.
Crystal Structure of N-Acyl Homoserine Lactone Lactonase From Pseudomonas Poae To Be Published.
Page generated: Fri Aug 22 15:26:34 2025
|
