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Zinc in PDB 8w40: Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form

Protein crystallography data

The structure of Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form, PDB code: 8w40 was solved by P.I.Kelly, J.H.Henderson, J.H.Mills, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.50 / 1.45
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.593, 62.593, 121.416, 90, 90, 120
R / Rfree (%) 13 / 16.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form (pdb code 8w40). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form, PDB code: 8w40:

Zinc binding site 1 out of 1 in 8w40

Go back to Zinc Binding Sites List in 8w40
Zinc binding site 1 out of 1 in the Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Computationally Designed Metalloprotein Containing the Metal-Chelating, Fluorogenic, Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine: Zinc-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn305

b:21.7
occ:0.70
O09 A:HQA110 2.0 29.3 1.0
OE2 A:GLU159 2.0 26.7 1.0
N06 A:HQA110 2.0 22.5 1.0
OE2 A:GLU210 2.1 38.8 1.0
OE1 A:GLU159 2.3 26.6 1.0
CD A:GLU159 2.4 25.8 1.0
OE1 A:GLU210 2.4 42.2 0.8
CD A:GLU210 2.6 37.2 0.8
C08 A:HQA110 2.6 28.5 1.0
C07 A:HQA110 2.7 25.3 1.0
C05 A:HQA110 3.2 21.8 1.0
H05 A:HQA110 3.4 26.2 1.0
O A:HOH402 3.6 51.0 1.0
O A:HOH430 3.8 25.5 1.0
O A:HOH419 3.8 50.3 1.0
CG A:GLU159 3.9 22.4 1.0
C10 A:HQA110 4.0 31.0 1.0
HD13 A:LEU231 4.0 34.4 1.0
C13 A:HQA110 4.1 24.5 1.0
CG A:GLU210 4.1 29.1 0.8
O A:HOH438 4.2 32.2 1.0
HG2 A:GLU159 4.3 26.9 1.0
HB3 A:GLU159 4.3 22.0 1.0
HG3 A:GLU159 4.4 26.9 1.0
H10 A:HQA110 4.4 37.2 1.0
HB A:THR180 4.5 20.7 1.0
C04 A:HQA110 4.5 20.1 1.0
HG2 A:GLU210 4.5 35.0 0.8
HG3 A:GLU210 4.5 35.0 0.8
HB1 A:ALA131 4.6 23.0 1.0
O A:HOH572 4.7 57.0 1.0
CB A:GLU159 4.7 18.3 1.0
HD11 A:LEU231 4.7 34.4 1.0
HB3 A:GLU210 4.8 25.6 1.0
HG12 A:ILE133 4.8 21.8 1.0
CD1 A:LEU231 4.8 28.7 1.0
C14 A:HQA110 4.8 22.6 1.0
HB2 A:GLU210 4.8 25.6 1.0
HB2 A:ALA131 4.9 23.0 1.0
CB A:GLU210 4.9 21.3 1.0
HB2 A:GLU159 4.9 22.0 1.0
HD23 A:LEU157 5.0 24.6 1.0
C11 A:HQA110 5.0 32.2 1.0

Reference:

P.I.Kelly, J.N.Henderson, J.H.Mills. Computational Design of A Fluorogenic Metalloprotein Containing the Non-Canonical Amino Acid 3-(8-Hydroxyquinolin-3-Yl)-L-Alanine To Be Published.
Page generated: Fri Aug 22 14:58:47 2025

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