Zinc in PDB 8uis: Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
Enzymatic activity of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
All present enzymatic activity of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis:
2.7.7.6;
Other elements in 8uis:
The structure of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
(pdb code 8uis). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the
Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis, PDB code: 8uis:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Zinc binding site 1 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 1 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2001
b:286.9
occ:1.00
|
HG23
|
A:THR73
|
1.3
|
270.5
|
1.0
|
|
HG
|
A:CYS81
|
1.5
|
269.0
|
1.0
|
|
CG2
|
A:THR73
|
2.1
|
270.5
|
1.0
|
|
SG
|
A:CYS71
|
2.2
|
269.3
|
1.0
|
|
SG
|
A:CYS74
|
2.2
|
267.8
|
1.0
|
|
H
|
A:CYS74
|
2.4
|
267.8
|
1.0
|
|
SG
|
A:CYS81
|
2.4
|
269.0
|
1.0
|
|
HG22
|
A:THR73
|
2.4
|
270.5
|
1.0
|
|
HG21
|
A:THR73
|
2.4
|
270.5
|
1.0
|
|
HE2
|
A:HIS84
|
2.7
|
261.3
|
1.0
|
|
N
|
A:CYS74
|
2.8
|
267.8
|
1.0
|
|
HB2
|
A:CYS74
|
2.9
|
267.8
|
1.0
|
|
CB
|
A:CYS74
|
3.0
|
267.8
|
1.0
|
|
NE2
|
A:HIS84
|
3.1
|
261.3
|
1.0
|
|
HD2
|
A:HIS84
|
3.2
|
261.3
|
1.0
|
|
CB
|
A:THR73
|
3.3
|
270.5
|
1.0
|
|
CD2
|
A:HIS84
|
3.3
|
261.3
|
1.0
|
|
HB2
|
A:CYS71
|
3.4
|
269.3
|
1.0
|
|
CB
|
A:CYS71
|
3.4
|
269.3
|
1.0
|
|
CA
|
A:CYS74
|
3.5
|
267.8
|
1.0
|
|
H
|
A:THR73
|
3.5
|
270.5
|
1.0
|
|
C
|
A:THR73
|
3.5
|
270.5
|
1.0
|
|
HB3
|
A:CYS71
|
3.7
|
269.3
|
1.0
|
|
OG1
|
A:THR73
|
3.8
|
270.5
|
1.0
|
|
HA2
|
A:GLY63
|
3.8
|
277.6
|
1.0
|
|
CB
|
A:CYS81
|
3.8
|
269.0
|
1.0
|
|
CA
|
A:THR73
|
3.8
|
270.5
|
1.0
|
|
HB2
|
A:CYS81
|
3.8
|
269.0
|
1.0
|
|
HG1
|
A:THR73
|
3.8
|
270.5
|
1.0
|
|
HB3
|
A:CYS74
|
3.9
|
267.8
|
1.0
|
|
N
|
A:THR73
|
4.0
|
270.5
|
1.0
|
|
HA
|
A:CYS74
|
4.1
|
267.8
|
1.0
|
|
HA
|
A:CYS81
|
4.1
|
269.0
|
1.0
|
|
HB
|
A:THR73
|
4.1
|
270.5
|
1.0
|
|
CE1
|
A:HIS84
|
4.1
|
261.3
|
1.0
|
|
HD2
|
A:PRO82
|
4.3
|
255.9
|
1.0
|
|
H
|
A:ALA75
|
4.4
|
261.3
|
1.0
|
|
CG
|
A:HIS84
|
4.4
|
261.3
|
1.0
|
|
O
|
A:THR73
|
4.5
|
270.5
|
1.0
|
|
HB3
|
A:CYS81
|
4.5
|
269.0
|
1.0
|
|
HE1
|
A:HIS84
|
4.5
|
261.3
|
1.0
|
|
CA
|
A:CYS81
|
4.5
|
269.0
|
1.0
|
|
C
|
A:CYS74
|
4.6
|
267.8
|
1.0
|
|
H
|
A:GLY76
|
4.6
|
264.0
|
1.0
|
|
CA
|
A:CYS71
|
4.7
|
269.3
|
1.0
|
|
HA
|
A:THR73
|
4.7
|
270.5
|
1.0
|
|
CA
|
A:GLY63
|
4.7
|
277.6
|
1.0
|
|
N
|
A:ALA75
|
4.8
|
261.3
|
1.0
|
|
O
|
A:ARG61
|
4.8
|
273.6
|
1.0
|
|
ND1
|
A:HIS84
|
4.8
|
261.3
|
1.0
|
|
C
|
A:CYS71
|
4.8
|
269.3
|
1.0
|
|
H
|
A:GLY83
|
4.9
|
259.3
|
1.0
|
|
Zinc binding site 2 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 2 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2002
b:299.7
occ:1.00
|
HG
|
A:CYS184
|
1.0
|
247.1
|
1.0
|
|
SG
|
A:CYS184
|
2.2
|
247.1
|
1.0
|
|
SG
|
A:CYS114
|
2.2
|
248.1
|
1.0
|
|
SG
|
A:CYS111
|
2.3
|
248.5
|
1.0
|
|
SG
|
A:CYS154
|
2.3
|
253.2
|
1.0
|
|
H
|
A:CYS184
|
2.8
|
247.1
|
1.0
|
|
HB3
|
A:CYS114
|
2.8
|
248.1
|
1.0
|
|
H
|
A:CYS114
|
2.8
|
248.1
|
1.0
|
|
CB
|
A:CYS114
|
3.1
|
248.1
|
1.0
|
|
CB
|
A:CYS154
|
3.4
|
253.2
|
1.0
|
|
HB3
|
A:CYS154
|
3.4
|
253.2
|
1.0
|
|
CB
|
A:CYS111
|
3.4
|
248.5
|
1.0
|
|
CB
|
A:CYS184
|
3.4
|
247.1
|
1.0
|
|
HB3
|
A:CYS111
|
3.5
|
248.5
|
1.0
|
|
HB2
|
A:CYS154
|
3.5
|
253.2
|
1.0
|
|
HB2
|
A:CYS111
|
3.5
|
248.5
|
1.0
|
|
N
|
A:CYS114
|
3.5
|
248.1
|
1.0
|
|
HB3
|
A:CYS184
|
3.5
|
247.1
|
1.0
|
|
HB2
|
A:PHE113
|
3.5
|
229.9
|
1.0
|
|
N
|
A:CYS184
|
3.6
|
247.1
|
1.0
|
|
HE22
|
A:GLN188
|
3.7
|
232.0
|
1.0
|
|
HB2
|
A:CYS114
|
3.9
|
248.1
|
1.0
|
|
CA
|
A:CYS114
|
3.9
|
248.1
|
1.0
|
|
H
|
A:GLY185
|
4.0
|
238.0
|
1.0
|
|
CA
|
A:CYS184
|
4.0
|
247.1
|
1.0
|
|
H
|
A:ARG186
|
4.0
|
226.2
|
1.0
|
|
H
|
A:PHE113
|
4.1
|
229.9
|
1.0
|
|
HB2
|
A:CYS184
|
4.2
|
247.1
|
1.0
|
|
HB2
|
A:ARG186
|
4.3
|
226.2
|
1.0
|
|
NE2
|
A:GLN188
|
4.4
|
232.0
|
1.0
|
|
CB
|
A:PHE113
|
4.4
|
229.9
|
1.0
|
|
N
|
A:GLY185
|
4.4
|
238.0
|
1.0
|
|
HA2
|
A:GLY183
|
4.5
|
239.4
|
1.0
|
|
C
|
A:PHE113
|
4.5
|
229.9
|
1.0
|
|
C
|
A:CYS184
|
4.5
|
247.1
|
1.0
|
|
HA
|
A:CYS114
|
4.6
|
248.1
|
1.0
|
|
H
|
A:SER115
|
4.7
|
248.1
|
1.0
|
|
C
|
A:GLY183
|
4.7
|
239.4
|
1.0
|
|
C
|
A:CYS114
|
4.7
|
248.1
|
1.0
|
|
HB3
|
A:PHE113
|
4.7
|
229.9
|
1.0
|
|
HA3
|
A:GLY183
|
4.7
|
239.4
|
1.0
|
|
HB2
|
A:LYS116
|
4.8
|
248.1
|
1.0
|
|
CA
|
A:CYS154
|
4.8
|
253.2
|
1.0
|
|
CA
|
A:CYS111
|
4.8
|
248.5
|
1.0
|
|
HD3
|
A:LYS116
|
4.8
|
248.1
|
1.0
|
|
N
|
A:PHE113
|
4.8
|
229.9
|
1.0
|
|
HE21
|
A:GLN188
|
4.8
|
232.0
|
1.0
|
|
CA
|
A:PHE113
|
4.8
|
229.9
|
1.0
|
|
HD2
|
A:PHE113
|
4.8
|
229.9
|
1.0
|
|
HA
|
A:CYS184
|
4.9
|
247.1
|
1.0
|
|
CA
|
A:GLY183
|
4.9
|
239.4
|
1.0
|
|
N
|
A:ARG186
|
4.9
|
226.2
|
1.0
|
|
H
|
A:LYS116
|
4.9
|
248.1
|
1.0
|
|
N
|
A:SER115
|
5.0
|
248.1
|
1.0
|
|
Zinc binding site 3 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 3 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1201
b:326.6
occ:1.00
|
HG
|
B:CYS1140
|
1.5
|
263.5
|
1.0
|
|
HG
|
B:CYS1119
|
2.1
|
261.2
|
1.0
|
|
SG
|
B:CYS1140
|
2.2
|
263.5
|
1.0
|
|
SG
|
B:CYS1122
|
2.3
|
268.0
|
1.0
|
|
SG
|
B:CYS1137
|
2.4
|
263.3
|
1.0
|
|
HB3
|
B:CYS1122
|
2.8
|
268.0
|
1.0
|
|
HB2
|
B:CYS1140
|
2.9
|
263.5
|
1.0
|
|
SG
|
B:CYS1119
|
3.0
|
261.2
|
1.0
|
|
H
|
B:CYS1122
|
3.1
|
268.0
|
1.0
|
|
CB
|
B:CYS1122
|
3.1
|
268.0
|
1.0
|
|
CB
|
B:CYS1140
|
3.1
|
263.5
|
1.0
|
|
HB3
|
B:CYS1119
|
3.2
|
261.2
|
1.0
|
|
H
|
B:CYS1140
|
3.4
|
263.5
|
1.0
|
|
CB
|
B:CYS1119
|
3.6
|
261.2
|
1.0
|
|
N
|
B:CYS1140
|
3.7
|
263.5
|
1.0
|
|
N
|
B:CYS1122
|
3.8
|
268.0
|
1.0
|
|
HB2
|
B:CYS1122
|
3.8
|
268.0
|
1.0
|
|
HB2
|
B:CYS1119
|
3.9
|
261.2
|
1.0
|
|
HB3
|
B:CYS1140
|
3.9
|
263.5
|
1.0
|
|
HB2
|
B:LEU1121
|
3.9
|
258.9
|
1.0
|
|
CB
|
B:CYS1137
|
4.0
|
263.3
|
1.0
|
|
CA
|
B:CYS1140
|
4.0
|
263.5
|
1.0
|
|
CA
|
B:CYS1122
|
4.1
|
268.0
|
1.0
|
|
HB3
|
B:CYS1137
|
4.1
|
263.3
|
1.0
|
|
HA3
|
B:GLY1139
|
4.1
|
255.1
|
1.0
|
|
HD21
|
B:ASN1142
|
4.2
|
262.0
|
1.0
|
|
HB2
|
B:CYS1137
|
4.2
|
263.3
|
1.0
|
|
C
|
B:GLY1139
|
4.2
|
255.1
|
1.0
|
|
H
|
B:GLY1123
|
4.4
|
263.7
|
1.0
|
|
HD22
|
B:ASN1142
|
4.5
|
262.0
|
1.0
|
|
HA
|
B:CYS1140
|
4.6
|
263.5
|
1.0
|
|
CA
|
B:GLY1139
|
4.6
|
255.1
|
1.0
|
|
HA
|
B:CYS1122
|
4.7
|
268.0
|
1.0
|
|
ND2
|
B:ASN1142
|
4.7
|
262.0
|
1.0
|
|
H
|
B:ILE1124
|
4.7
|
266.6
|
1.0
|
|
CB
|
B:LEU1121
|
4.9
|
258.9
|
1.0
|
|
O
|
B:GLY1139
|
4.9
|
255.1
|
1.0
|
|
HB
|
B:ILE1124
|
4.9
|
266.6
|
1.0
|
|
HD12
|
B:LEU1121
|
5.0
|
258.9
|
1.0
|
|
C
|
B:LEU1121
|
5.0
|
258.9
|
1.0
|
|
H
|
B:LEU1121
|
5.0
|
258.9
|
1.0
|
|
H
|
B:ARG1141
|
5.0
|
257.0
|
1.0
|
|
Zinc binding site 4 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 4 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn301
b:258.1
occ:1.00
|
HG
|
C:CYS88
|
1.6
|
178.0
|
1.0
|
|
SG
|
C:CYS90
|
2.2
|
192.3
|
1.0
|
|
SG
|
C:CYS97
|
2.2
|
168.3
|
1.0
|
|
SG
|
C:CYS94
|
2.3
|
173.9
|
1.0
|
|
SG
|
C:CYS88
|
2.3
|
178.0
|
1.0
|
|
HB3
|
C:CYS90
|
3.0
|
192.3
|
1.0
|
|
CB
|
C:CYS90
|
3.2
|
192.3
|
1.0
|
|
HB3
|
C:CYS94
|
3.3
|
173.9
|
1.0
|
|
HB3
|
C:CYS88
|
3.3
|
178.0
|
1.0
|
|
H
|
C:CYS94
|
3.3
|
173.9
|
1.0
|
|
CB
|
C:CYS94
|
3.4
|
173.9
|
1.0
|
|
HB3
|
C:CYS97
|
3.4
|
168.3
|
1.0
|
|
CB
|
C:CYS88
|
3.5
|
178.0
|
1.0
|
|
CB
|
C:CYS97
|
3.5
|
168.3
|
1.0
|
|
N
|
C:CYS94
|
3.5
|
173.9
|
1.0
|
|
HB2
|
C:CYS90
|
3.7
|
192.3
|
1.0
|
|
HB2
|
C:CYS88
|
4.0
|
178.0
|
1.0
|
|
CA
|
C:CYS94
|
4.0
|
173.9
|
1.0
|
|
C
|
C:PHE93
|
4.0
|
165.3
|
1.0
|
|
HA
|
C:PHE93
|
4.1
|
165.3
|
1.0
|
|
HB2
|
C:CYS97
|
4.1
|
168.3
|
1.0
|
|
HB2
|
C:CYS94
|
4.2
|
173.9
|
1.0
|
|
H
|
C:CYS97
|
4.2
|
168.3
|
1.0
|
|
HB2
|
C:GLU96
|
4.2
|
169.1
|
1.0
|
|
H
|
C:PHE93
|
4.3
|
165.3
|
1.0
|
|
N
|
C:PHE93
|
4.3
|
165.3
|
1.0
|
|
N
|
C:CYS97
|
4.4
|
168.3
|
1.0
|
|
CA
|
C:PHE93
|
4.4
|
165.3
|
1.0
|
|
CA
|
C:CYS90
|
4.4
|
192.3
|
1.0
|
|
N
|
C:CYS90
|
4.4
|
192.3
|
1.0
|
|
O
|
C:THR89
|
4.5
|
187.5
|
1.0
|
|
C
|
C:THR89
|
4.5
|
187.5
|
1.0
|
|
O
|
C:CYS94
|
4.5
|
173.9
|
1.0
|
|
C
|
C:CYS94
|
4.5
|
173.9
|
1.0
|
|
H
|
C:THR89
|
4.6
|
187.5
|
1.0
|
|
CA
|
C:CYS97
|
4.6
|
168.3
|
1.0
|
|
H
|
C:GLU96
|
4.6
|
169.1
|
1.0
|
|
O
|
C:PHE93
|
4.6
|
165.3
|
1.0
|
|
N
|
C:THR89
|
4.6
|
187.5
|
1.0
|
|
C
|
C:CYS88
|
4.6
|
178.0
|
1.0
|
|
CA
|
C:CYS88
|
4.7
|
178.0
|
1.0
|
|
H
|
C:CYS90
|
4.7
|
192.3
|
1.0
|
|
HA
|
C:CYS94
|
4.8
|
173.9
|
1.0
|
|
C
|
C:GLU92
|
4.8
|
178.8
|
1.0
|
|
C
|
C:GLU96
|
4.9
|
169.1
|
1.0
|
|
HA
|
C:SER85
|
4.9
|
165.4
|
1.0
|
|
Zinc binding site 5 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 5 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:306.5
occ:1.00
|
HB2
|
I:CYS42
|
1.6
|
246.0
|
1.0
|
|
HB3
|
I:CYS42
|
2.0
|
246.0
|
1.0
|
|
CB
|
I:CYS42
|
2.1
|
246.0
|
1.0
|
|
SG
|
I:CYS17
|
2.3
|
246.0
|
1.0
|
|
SG
|
I:CYS39
|
2.3
|
249.5
|
1.0
|
|
SG
|
I:CYS20
|
2.5
|
243.7
|
1.0
|
|
HG
|
I:CYS20
|
2.7
|
243.7
|
1.0
|
|
HB3
|
I:CYS39
|
3.1
|
249.5
|
1.0
|
|
SG
|
I:CYS42
|
3.2
|
246.0
|
1.0
|
|
CB
|
I:CYS39
|
3.2
|
249.5
|
1.0
|
|
HB2
|
I:CYS17
|
3.2
|
246.0
|
1.0
|
|
CB
|
I:CYS17
|
3.3
|
246.0
|
1.0
|
|
HB2
|
I:GLU19
|
3.4
|
237.1
|
1.0
|
|
HB2
|
I:CYS39
|
3.4
|
249.5
|
1.0
|
|
HB3
|
I:CYS17
|
3.4
|
246.0
|
1.0
|
|
CA
|
I:CYS42
|
3.4
|
246.0
|
1.0
|
|
H
|
I:CYS20
|
3.4
|
243.7
|
1.0
|
|
HB3
|
I:TYR44
|
3.7
|
235.2
|
1.0
|
|
C
|
I:CYS42
|
3.8
|
246.0
|
1.0
|
|
HG
|
I:CYS42
|
3.8
|
246.0
|
1.0
|
|
O
|
I:CYS42
|
3.9
|
246.0
|
1.0
|
|
CB
|
I:CYS20
|
3.9
|
243.7
|
1.0
|
|
HB3
|
I:CYS20
|
3.9
|
243.7
|
1.0
|
|
H
|
I:CYS42
|
3.9
|
246.0
|
1.0
|
|
N
|
I:CYS42
|
4.0
|
246.0
|
1.0
|
|
N
|
I:CYS20
|
4.1
|
243.7
|
1.0
|
|
HA
|
I:CYS42
|
4.2
|
246.0
|
1.0
|
|
H
|
I:TYR44
|
4.3
|
235.2
|
1.0
|
|
H
|
I:GLU19
|
4.3
|
237.1
|
1.0
|
|
CB
|
I:GLU19
|
4.3
|
237.1
|
1.0
|
|
HG2
|
I:GLU19
|
4.3
|
237.1
|
1.0
|
|
HB2
|
I:TYR44
|
4.4
|
235.2
|
1.0
|
|
HB2
|
I:ASN22
|
4.5
|
234.3
|
1.0
|
|
CB
|
I:TYR44
|
4.5
|
235.2
|
1.0
|
|
CA
|
I:CYS20
|
4.6
|
243.7
|
1.0
|
|
HB2
|
I:CYS20
|
4.6
|
243.7
|
1.0
|
|
CA
|
I:CYS39
|
4.6
|
249.5
|
1.0
|
|
N
|
I:ASP43
|
4.6
|
226.8
|
1.0
|
|
CA
|
I:CYS17
|
4.7
|
246.0
|
1.0
|
|
CG
|
I:GLU19
|
4.7
|
237.1
|
1.0
|
|
OD1
|
I:ASN41
|
4.7
|
231.0
|
1.0
|
|
HG3
|
I:GLU19
|
4.7
|
237.1
|
1.0
|
|
HD22
|
I:ASN22
|
4.8
|
234.3
|
1.0
|
|
H
|
I:ASN22
|
4.8
|
234.3
|
1.0
|
|
H
|
I:ASP43
|
4.8
|
226.8
|
1.0
|
|
O
|
I:ARG40
|
4.8
|
221.8
|
1.0
|
|
HB3
|
I:GLU19
|
4.9
|
237.1
|
1.0
|
|
O
|
I:CYS39
|
4.9
|
249.5
|
1.0
|
|
N
|
I:TYR44
|
4.9
|
235.2
|
1.0
|
|
HA
|
I:CYS17
|
4.9
|
246.0
|
1.0
|
|
HD2
|
I:TYR44
|
4.9
|
235.2
|
1.0
|
|
C
|
I:GLU19
|
4.9
|
237.1
|
1.0
|
|
C
|
I:CYS39
|
5.0
|
249.5
|
1.0
|
|
CA
|
I:GLU19
|
5.0
|
237.1
|
1.0
|
|
N
|
I:GLU19
|
5.0
|
237.1
|
1.0
|
|
Zinc binding site 6 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 6 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:296.6
occ:1.00
|
HG
|
I:CYS89
|
1.4
|
249.7
|
1.0
|
|
SG
|
I:CYS119
|
2.2
|
242.1
|
1.0
|
|
SG
|
I:CYS114
|
2.2
|
245.5
|
1.0
|
|
SG
|
I:CYS86
|
2.3
|
250.7
|
1.0
|
|
SG
|
I:CYS89
|
2.4
|
249.7
|
1.0
|
|
HB3
|
I:CYS119
|
2.8
|
242.1
|
1.0
|
|
HB2
|
I:CYS86
|
2.9
|
250.7
|
1.0
|
|
CB
|
I:CYS86
|
3.0
|
250.7
|
1.0
|
|
HB2
|
I:CYS114
|
3.0
|
245.5
|
1.0
|
|
CB
|
I:CYS114
|
3.1
|
245.5
|
1.0
|
|
CB
|
I:CYS119
|
3.1
|
242.1
|
1.0
|
|
HB3
|
I:CYS86
|
3.1
|
250.7
|
1.0
|
|
HB3
|
I:CYS114
|
3.2
|
245.5
|
1.0
|
|
H
|
I:CYS89
|
3.4
|
249.7
|
1.0
|
|
HB2
|
I:CYS119
|
3.5
|
242.1
|
1.0
|
|
HB3
|
I:HIS91
|
3.6
|
239.0
|
1.0
|
|
CB
|
I:CYS89
|
3.8
|
249.7
|
1.0
|
|
HB3
|
I:ALA116
|
3.9
|
241.5
|
1.0
|
|
HB3
|
I:CYS89
|
3.9
|
249.7
|
1.0
|
|
HB3
|
I:HIS121
|
3.9
|
231.9
|
1.0
|
|
N
|
I:CYS89
|
3.9
|
249.7
|
1.0
|
|
H
|
I:HIS91
|
4.0
|
239.0
|
1.0
|
|
HB2
|
I:LYS88
|
4.0
|
243.0
|
1.0
|
|
H
|
I:LYS88
|
4.0
|
243.0
|
1.0
|
|
O
|
I:CYS119
|
4.2
|
242.1
|
1.0
|
|
CA
|
I:CYS119
|
4.4
|
242.1
|
1.0
|
|
CA
|
I:CYS89
|
4.4
|
249.7
|
1.0
|
|
CA
|
I:CYS86
|
4.4
|
250.7
|
1.0
|
|
CB
|
I:HIS91
|
4.5
|
239.0
|
1.0
|
|
HB2
|
I:HIS91
|
4.5
|
239.0
|
1.0
|
|
CA
|
I:CYS114
|
4.5
|
245.5
|
1.0
|
|
H
|
I:HIS121
|
4.6
|
231.9
|
1.0
|
|
HB2
|
I:CYS89
|
4.6
|
249.7
|
1.0
|
|
H
|
I:GLY90
|
4.6
|
241.9
|
1.0
|
|
C
|
I:CYS119
|
4.6
|
242.1
|
1.0
|
|
HA
|
I:CYS86
|
4.7
|
250.7
|
1.0
|
|
H
|
I:GLN87
|
4.7
|
243.8
|
1.0
|
|
C
|
I:LYS88
|
4.7
|
243.0
|
1.0
|
|
H
|
I:ALA116
|
4.8
|
241.5
|
1.0
|
|
HA
|
I:CYS114
|
4.8
|
245.5
|
1.0
|
|
N
|
I:HIS91
|
4.8
|
239.0
|
1.0
|
|
CB
|
I:HIS121
|
4.8
|
231.9
|
1.0
|
|
N
|
I:LYS88
|
4.8
|
243.0
|
1.0
|
|
HA
|
I:CYS119
|
4.9
|
242.1
|
1.0
|
|
CB
|
I:ALA116
|
4.9
|
241.5
|
1.0
|
|
HB2
|
I:HIS121
|
4.9
|
231.9
|
1.0
|
|
N
|
I:GLY90
|
4.9
|
241.9
|
1.0
|
|
CB
|
I:LYS88
|
4.9
|
243.0
|
1.0
|
|
C
|
I:CYS89
|
4.9
|
249.7
|
1.0
|
|
Zinc binding site 7 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 7 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:225.8
occ:1.00
|
SG
|
J:CYS7
|
2.2
|
153.2
|
1.0
|
|
SG
|
J:CYS45
|
2.3
|
161.7
|
1.0
|
|
SG
|
J:CYS44
|
2.3
|
160.2
|
1.0
|
|
SG
|
J:CYS10
|
2.3
|
156.9
|
1.0
|
|
H
|
J:CYS45
|
3.0
|
161.7
|
1.0
|
|
N
|
J:CYS45
|
3.0
|
161.7
|
1.0
|
|
HH21
|
J:ARG42
|
3.0
|
153.5
|
1.0
|
|
HB3
|
J:CYS10
|
3.1
|
156.9
|
1.0
|
|
HB3
|
J:CYS7
|
3.1
|
153.2
|
1.0
|
|
HB2
|
J:CYS44
|
3.1
|
160.2
|
1.0
|
|
CB
|
J:CYS7
|
3.2
|
153.2
|
1.0
|
|
HA
|
J:CYS45
|
3.2
|
161.7
|
1.0
|
|
CB
|
J:CYS44
|
3.3
|
160.2
|
1.0
|
|
H
|
J:CYS10
|
3.3
|
156.9
|
1.0
|
|
CB
|
J:CYS10
|
3.3
|
156.9
|
1.0
|
|
HB2
|
J:CYS7
|
3.3
|
153.2
|
1.0
|
|
CA
|
J:CYS45
|
3.4
|
161.7
|
1.0
|
|
C
|
J:CYS44
|
3.4
|
160.2
|
1.0
|
|
CB
|
J:CYS45
|
3.5
|
161.7
|
1.0
|
|
HE
|
J:ARG42
|
3.5
|
153.5
|
1.0
|
|
NH2
|
J:ARG42
|
3.8
|
153.5
|
1.0
|
|
CA
|
J:CYS44
|
3.9
|
160.2
|
1.0
|
|
HB
|
J:THR9
|
3.9
|
148.2
|
1.0
|
|
HB3
|
J:LYS12
|
4.0
|
155.5
|
1.0
|
|
N
|
J:CYS10
|
4.0
|
156.9
|
1.0
|
|
O
|
J:CYS44
|
4.0
|
160.2
|
1.0
|
|
HB2
|
J:CYS10
|
4.0
|
156.9
|
1.0
|
|
HB2
|
J:CYS45
|
4.1
|
161.7
|
1.0
|
|
HB3
|
J:CYS45
|
4.1
|
161.7
|
1.0
|
|
H
|
J:LYS12
|
4.1
|
155.5
|
1.0
|
|
HB3
|
J:CYS44
|
4.1
|
160.2
|
1.0
|
|
HB2
|
J:ARG42
|
4.2
|
153.5
|
1.0
|
|
CA
|
J:CYS10
|
4.2
|
156.9
|
1.0
|
|
NE
|
J:ARG42
|
4.2
|
153.5
|
1.0
|
|
HH22
|
J:ARG42
|
4.3
|
153.5
|
1.0
|
|
HB2
|
J:LYS12
|
4.5
|
155.5
|
1.0
|
|
H
|
J:GLY11
|
4.5
|
152.4
|
1.0
|
|
CZ
|
J:ARG42
|
4.5
|
153.5
|
1.0
|
|
CA
|
J:CYS7
|
4.6
|
153.2
|
1.0
|
|
H
|
J:THR9
|
4.6
|
148.2
|
1.0
|
|
H
|
J:CYS44
|
4.6
|
160.2
|
1.0
|
|
CB
|
J:LYS12
|
4.7
|
155.5
|
1.0
|
|
N
|
J:CYS44
|
4.7
|
160.2
|
1.0
|
|
HA
|
J:CYS44
|
4.7
|
160.2
|
1.0
|
|
HB3
|
J:ARG42
|
4.7
|
153.5
|
1.0
|
|
HE3
|
J:MET48
|
4.9
|
152.2
|
1.0
|
|
CB
|
J:THR9
|
4.9
|
148.2
|
1.0
|
|
N
|
J:GLY11
|
4.9
|
152.4
|
1.0
|
|
N
|
J:LYS12
|
4.9
|
155.5
|
1.0
|
|
C
|
J:CYS45
|
4.9
|
161.7
|
1.0
|
|
C
|
J:CYS7
|
4.9
|
153.2
|
1.0
|
|
CB
|
J:ARG42
|
5.0
|
153.5
|
1.0
|
|
C
|
J:CYS10
|
5.0
|
156.9
|
1.0
|
|
O
|
J:CYS7
|
5.0
|
153.2
|
1.0
|
|
HD3
|
J:LYS12
|
5.0
|
155.5
|
1.0
|
|
Zinc binding site 8 out
of 8 in 8uis
Go back to
Zinc Binding Sites List in 8uis
Zinc binding site 8 out
of 8 in the Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Structure of Transcription Complex Pol II-Dsif-Nelf-Tfiis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:220.1
occ:1.00
|
HG
|
L:CYS19
|
1.1
|
172.3
|
1.0
|
|
HB3
|
L:CYS39
|
2.0
|
178.0
|
1.0
|
|
SG
|
L:CYS19
|
2.3
|
172.3
|
1.0
|
|
SG
|
L:CYS22
|
2.3
|
174.8
|
1.0
|
|
SG
|
L:CYS36
|
2.3
|
181.8
|
1.0
|
|
HB2
|
L:CYS39
|
2.5
|
178.0
|
1.0
|
|
CB
|
L:CYS39
|
2.6
|
178.0
|
1.0
|
|
HB2
|
L:CYS36
|
2.7
|
181.8
|
1.0
|
|
HB3
|
L:CYS36
|
2.7
|
181.8
|
1.0
|
|
CB
|
L:CYS36
|
2.7
|
181.8
|
1.0
|
|
HB2
|
L:CYS19
|
3.2
|
172.3
|
1.0
|
|
CB
|
L:CYS19
|
3.2
|
172.3
|
1.0
|
|
HB3
|
L:CYS19
|
3.3
|
172.3
|
1.0
|
|
SG
|
L:CYS39
|
3.3
|
178.0
|
1.0
|
|
H
|
L:CYS22
|
3.4
|
174.8
|
1.0
|
|
HB3
|
L:TYR41
|
3.4
|
174.4
|
1.0
|
|
HG1
|
L:THR24
|
3.6
|
176.5
|
1.0
|
|
OG1
|
L:THR24
|
3.7
|
176.5
|
1.0
|
|
H
|
L:TYR41
|
3.8
|
174.4
|
1.0
|
|
HG
|
L:CYS39
|
3.9
|
178.0
|
1.0
|
|
HB2
|
L:TYR41
|
3.9
|
174.4
|
1.0
|
|
H
|
L:CYS39
|
3.9
|
178.0
|
1.0
|
|
HB2
|
L:GLU21
|
3.9
|
175.1
|
1.0
|
|
CB
|
L:CYS22
|
3.9
|
174.8
|
1.0
|
|
CA
|
L:CYS39
|
4.0
|
178.0
|
1.0
|
|
CB
|
L:TYR41
|
4.1
|
174.4
|
1.0
|
|
N
|
L:CYS22
|
4.1
|
174.8
|
1.0
|
|
HB3
|
L:CYS22
|
4.2
|
174.8
|
1.0
|
|
CA
|
L:CYS36
|
4.2
|
181.8
|
1.0
|
|
N
|
L:CYS39
|
4.3
|
178.0
|
1.0
|
|
H
|
L:GLU21
|
4.3
|
175.1
|
1.0
|
|
HG21
|
L:THR24
|
4.5
|
176.5
|
1.0
|
|
HD2
|
L:TYR41
|
4.5
|
174.4
|
1.0
|
|
H
|
L:THR24
|
4.6
|
176.5
|
1.0
|
|
HB2
|
L:CYS22
|
4.6
|
174.8
|
1.0
|
|
OE2
|
L:GLU38
|
4.6
|
175.3
|
1.0
|
|
HG23
|
L:THR24
|
4.6
|
176.5
|
1.0
|
|
HB3
|
L:GLU21
|
4.6
|
175.1
|
1.0
|
|
HA
|
L:CYS39
|
4.6
|
178.0
|
1.0
|
|
CA
|
L:CYS22
|
4.6
|
174.8
|
1.0
|
|
HA
|
L:CYS36
|
4.6
|
181.8
|
1.0
|
|
N
|
L:TYR41
|
4.6
|
174.4
|
1.0
|
|
C
|
L:CYS39
|
4.6
|
178.0
|
1.0
|
|
CB
|
L:GLU21
|
4.7
|
175.1
|
1.0
|
|
CA
|
L:CYS19
|
4.7
|
172.3
|
1.0
|
|
OE1
|
L:GLU38
|
4.8
|
175.3
|
1.0
|
|
H
|
L:CYS36
|
4.8
|
181.8
|
1.0
|
|
H
|
L:GLY40
|
4.8
|
175.4
|
1.0
|
|
HE1
|
L:MET44
|
4.8
|
176.5
|
1.0
|
|
H
|
L:GLU38
|
4.8
|
175.3
|
1.0
|
|
CG2
|
L:THR24
|
4.9
|
176.5
|
1.0
|
|
CB
|
L:THR24
|
4.9
|
176.5
|
1.0
|
|
N
|
L:GLY40
|
4.9
|
175.4
|
1.0
|
|
C
|
L:CYS36
|
4.9
|
181.8
|
1.0
|
|
HA
|
L:CYS19
|
4.9
|
172.3
|
1.0
|
|
CA
|
L:TYR41
|
5.0
|
174.4
|
1.0
|
|
CD
|
L:GLU38
|
5.0
|
175.3
|
1.0
|
|
Reference:
B.G.Su,
S.M.Vos.
Distinct Negative Elongation Factor Conformations Regulate Rna Polymerase II Promoter-Proximal Pausing. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38401543
DOI: 10.1016/J.MOLCEL.2024.01.023
Page generated: Fri Aug 22 14:17:40 2025
|
