Zinc in PDB 8s3u: LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72

All present enzymatic activity of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72:
3.4.24.32;

The structure of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72, PDB code: 8s3u was solved by W.Rypniewski, K.Biniek-Antosiak, M.Bejger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.13 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.53, 60.15, 124.25, 90, 90, 90
R / Rfree (%)	19.3 / 29.8

The binding sites of Zinc atom in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 (pdb code 8s3u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72, PDB code: 8s3u:

Zinc binding site 1 out of 1 in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:49.0 occ:1.00 ND1 A:HIS208 1.8 33.1 1.0 OD1 A:ASP119 1.8 54.7 1.0 NE2 A:HIS115 1.9 50.9 1.0 O3 A:PO4402 2.0 62.3 1.0 O4 A:PO4402 2.3 51.0 1.0 CG A:ASP119 2.4 50.4 1.0 CE1 A:HIS208 2.4 38.1 1.0 OD2 A:ASP119 2.4 55.5 1.0 P A:PO4402 2.7 50.8 1.0 CE1 A:HIS115 2.8 52.2 1.0 CG A:HIS208 3.1 36.4 1.0 CD2 A:HIS115 3.2 60.0 1.0 O2 A:PO4402 3.5 54.2 1.0 NE2 A:HIS208 3.7 29.8 1.0 CB A:HIS208 3.7 47.9 1.0 O1 A:PO4402 3.9 63.0 1.0 CB A:ASP119 3.9 54.4 1.0 ND1 A:HIS115 4.0 50.3 1.0 CD2 A:HIS208 4.0 32.6 1.0 CG A:HIS115 4.2 47.6 1.0 NE2 A:HIS206 4.3 48.5 1.0 OH A:TYR26 4.4 57.5 1.0 CA A:HIS208 4.5 46.0 1.0 CA A:ASP119 4.6 53.7 1.0 N A:ASP119 4.6 49.6 1.0 NE2 A:HIS176 4.8 51.2 1.0 CE1 A:TYR26 5.0 67.2 1.0

W.Rypniewski, K.Biniek-Antosiak, M.Bejger. LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 To Be Published.