Zinc in PDB 8s3m: LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72

All present enzymatic activity of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72:
3.4.24.32;

The structure of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72, PDB code: 8s3m was solved by W.Rypniewski, K.Biniek-Antosiak, M.Bejger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.96 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.133, 60.985, 125.342, 90, 90, 90
R / Rfree (%)	18.7 / 26

The binding sites of Zinc atom in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 (pdb code 8s3m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72, PDB code: 8s3m:

Zinc binding site 1 out of 1 in the LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:26.6 occ:1.00 NE2 A:HIS115 1.8 30.3 1.0 OD1 A:ASP119 2.0 29.4 1.0 ND1 A:HIS208 2.0 20.1 1.0 O4 A:PO4402 2.2 28.2 1.0 O3 A:PO4402 2.3 30.4 1.0 CG A:ASP119 2.6 29.4 1.0 OD2 A:ASP119 2.6 33.0 1.0 P A:PO4402 2.7 28.0 1.0 CE1 A:HIS115 2.7 32.8 1.0 CE1 A:HIS208 2.8 20.5 1.0 CD2 A:HIS115 2.9 27.7 1.0 CG A:HIS208 3.2 21.4 1.0 O2 A:PO4402 3.7 36.2 1.0 CB A:HIS208 3.7 24.3 1.0 ND1 A:HIS115 3.9 28.3 1.0 O1 A:PO4402 4.0 28.7 1.0 NE2 A:HIS208 4.0 19.2 1.0 CG A:HIS115 4.0 26.8 1.0 CB A:ASP119 4.1 28.7 1.0 OH A:TYR26 4.2 22.5 1.0 O A:HOH513 4.2 31.7 1.0 CD2 A:HIS208 4.2 20.1 1.0 CA A:HIS208 4.4 24.5 1.0 NE2 A:HIS206 4.4 28.3 1.0 N A:ASP119 4.7 26.6 1.0 CA A:ASP119 4.7 28.1 1.0 CE1 A:TYR26 4.7 25.4 1.0 CZ A:TYR26 5.0 26.9 1.0 C A:VAL118 5.0 26.8 1.0

W.Rypniewski, K.Biniek-Antosiak, M.Bejger. LYSTT72, A Lytic Endopeptidase From Thermus Thermophilus MAT72 Phage VB_TT72 To Be Published.