Zinc in PDB 8rr1: Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model)

All present enzymatic activity of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model):
1.1.1.159; 1.1.1.178; 1.1.1.239; 1.1.1.35; 1.1.1.53; 1.1.1.62; 2.1.1.218; 2.1.1.221; 3.1.26.11;

The binding sites of Zinc atom in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model) (pdb code 8rr1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model), PDB code: 8rr1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model) within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn901 b:376.6 occ:1.00 OD2 E:ASP666 2.0 331.9 1.0 NE2 E:HIS644 2.3 341.9 1.0 ND1 E:HIS548 2.3 341.6 1.0 NE2 E:HIS546 2.3 336.8 1.0 CE1 E:HIS644 2.9 341.9 1.0 CG E:ASP666 2.9 331.9 1.0 CE1 E:HIS548 3.0 341.6 1.0 CE1 E:HIS546 3.1 336.8 1.0 ZN E:ZN902 3.2 361.8 1.0 CD2 E:HIS546 3.2 336.8 1.0 CB E:ASP666 3.3 331.9 1.0 CD2 E:HIS644 3.3 341.9 1.0 CG E:HIS548 3.4 341.6 1.0 CB E:HIS548 3.9 341.6 1.0 ND1 E:HIS644 3.9 341.9 1.0 OD1 E:ASP666 4.1 331.9 1.0 NE2 E:HIS548 4.1 341.6 1.0 CG E:HIS644 4.1 341.9 1.0 ND1 E:HIS546 4.2 336.8 1.0 CG E:HIS546 4.3 336.8 1.0 CD2 E:HIS548 4.4 341.6 1.0 NE2 E:HIS702 4.5 327.5 1.0 NE2 E:HIS551 4.7 321.6 1.0 CE1 E:HIS702 4.7 327.5 1.0 CA E:ASP666 4.8 331.9 1.0

Zinc binding site 2 out of 2 in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Tyr Precursor (Composite Model) within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn902 b:361.8 occ:1.00 OD2 E:ASP666 2.1 331.9 1.0 NE2 E:HIS551 2.3 321.6 1.0 NE2 E:HIS724 2.3 316.6 1.0 CE1 E:HIS724 2.7 316.6 1.0 CG E:ASP666 3.0 331.9 1.0 CD2 E:HIS551 3.0 321.6 1.0 OD1 E:ASP666 3.2 331.9 1.0 ZN E:ZN901 3.2 376.6 1.0 CE1 E:HIS551 3.3 321.6 1.0 CD2 E:HIS724 3.6 316.6 1.0 ND1 E:HIS724 4.0 316.6 1.0 CE1 E:HIS546 4.0 336.8 1.0 CG E:HIS551 4.1 321.6 1.0 NE2 E:HIS546 4.1 336.8 1.0 ND1 E:HIS551 4.2 321.6 1.0 O E:SER490 4.4 311.7 1.0 CB E:ASP666 4.4 331.9 1.0 CG E:HIS724 4.4 316.6 1.0 ND2 E:ASN550 4.4 317.2 1.0 ND1 E:HIS548 4.6 341.6 1.0 CE1 E:HIS702 4.8 327.5 1.0 CB E:HIS548 4.9 341.6 1.0 C E:SER490 5.0 311.7 1.0

A.Bhatta, B.Kuhle, R.D.Yu, K.Ditter, H.S.Hillen. Structural Basis of Human Mitochondrial and Nuclear Trna 3'-End Processing To Be Published.