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Zinc in PDB 8rl9: RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody

Enzymatic activity of RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody

All present enzymatic activity of RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody:
3.6.4.12;

Zinc Binding Sites:

The binding sites of Zinc atom in the RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody (pdb code 8rl9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody, PDB code: 8rl9:

Zinc binding site 1 out of 1 in 8rl9

Go back to Zinc Binding Sites List in 8rl9
Zinc binding site 1 out of 1 in the RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of RECQL5:Sfgfp Hetero Dimer Assembled By Di-Gluebody within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:125.0
occ:1.00
SG A:CYS411 2.3 111.1 1.0
SG A:CYS434 2.3 81.9 1.0
SG A:CYS427 2.3 98.4 1.0
SG A:CYS431 2.3 77.0 1.0
HB3 A:CYS431 2.7 87.8 1.0
CB A:CYS431 2.9 83.7 1.0
HB3 A:CYS411 2.9 94.6 1.0
HB2 A:CYS431 3.0 86.2 1.0
CB A:CYS411 3.2 94.7 1.0
H A:CYS434 3.5 88.6 1.0
HA A:CYS411 3.6 94.7 1.0
O A:CYS427 3.7 103.5 1.0
HB2 A:CYS427 3.7 90.8 1.0
CB A:CYS434 3.8 86.4 1.0
CB A:CYS427 3.8 88.7 1.0
HB2 A:CYS434 3.8 87.7 1.0
HB3 A:HIS433 3.8 89.0 1.0
HB2 A:CYS411 4.0 93.5 1.0
CA A:CYS411 4.0 92.9 1.0
N A:CYS434 4.1 90.4 1.0
HB3 A:CYS427 4.4 91.1 1.0
CA A:CYS431 4.4 82.4 1.0
CA A:CYS434 4.4 93.0 1.0
HB3 A:CYS434 4.5 88.2 1.0
C A:CYS427 4.6 97.2 1.0
HA A:CYS434 4.6 89.5 1.0
CA A:CYS427 4.7 91.5 1.0
HB2 A:HIS413 4.7 83.8 1.0
H A:ARG412 4.7 82.0 1.0
H A:HIS433 4.7 90.2 1.0
H A:CYS427 4.8 89.9 1.0
CB A:HIS433 4.8 84.5 1.0
HA A:CYS431 4.8 85.6 1.0
C A:CYS431 4.9 87.2 1.0
C A:CYS411 5.0 93.6 1.0
N A:CYS411 5.0 87.3 1.0
H A:HIS413 5.0 82.9 1.0

Reference:

G.Yi, D.Mamalis, M.Ye, L.Carrique, M.Fairhead, H.Li, K.Duerr, P.Zhang, D.B.Sauer, F.Von Delft, B.G.Davis, R.J.C.Gilbert. Di-Gluebodies: Rigid Modular Nanobody Protein Assemblies Enabling Simultaneous Determination of High-Resolution Cryo-Em Structures To Be Published.
Page generated: Sun Feb 9 00:45:42 2025

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