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Zinc in PDB 8jar: Structure of CRL2APPBP2 Bound with Rxxgpaa Degron (Dimer)

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of CRL2APPBP2 Bound with Rxxgpaa Degron (Dimer) (pdb code 8jar). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of CRL2APPBP2 Bound with Rxxgpaa Degron (Dimer), PDB code: 8jar:

Zinc binding site 1 out of 1 in 8jar

Go back to Zinc Binding Sites List in 8jar
Zinc binding site 1 out of 1 in the Structure of CRL2APPBP2 Bound with Rxxgpaa Degron (Dimer)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of CRL2APPBP2 Bound with Rxxgpaa Degron (Dimer) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:37.9
occ:1.00
NE2 A:HIS89 2.0 2.6 1.0
NE2 B:HIS89 2.0 10.3 1.0
SG A:CYS54 2.3 1.9 1.0
SG B:CYS54 2.3 10.8 1.0
CD2 B:HIS89 2.3 10.3 1.0
CD2 A:HIS89 2.6 2.6 1.0
CE1 A:HIS89 3.2 2.6 1.0
CE1 B:HIS89 3.3 10.3 1.0
CB B:CYS54 3.5 10.8 1.0
CA B:CYS54 3.6 10.8 1.0
CG B:HIS89 3.7 10.3 1.0
CB A:CYS54 3.7 1.9 1.0
CG A:HIS89 3.9 2.6 1.0
CA A:CYS54 4.0 1.9 1.0
N B:CYS54 4.1 10.8 1.0
ND1 B:HIS89 4.1 10.3 1.0
ND1 A:HIS89 4.1 2.6 1.0
N A:CYS54 4.5 1.9 1.0
CG2 A:VAL91 4.6 2.2 1.0
C B:LEU53 4.6 10.2 1.0
O A:HIS89 4.7 2.6 1.0
O B:LEU53 4.7 10.2 1.0
CB B:HIS89 4.9 10.3 1.0
C B:CYS54 5.0 10.8 1.0

Reference:

S.Zhao, K.Zhang, C.Xu. Molecular Basis For CRL2APPBP2-Mediated C-Degron Recognition To Be Published.
Page generated: Fri Aug 22 11:23:26 2025

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