Zinc in PDB 8gzh: Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc

All present enzymatic activity of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc:
2.7.7.6;

The structure of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc (pdb code 8gzh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc, PDB code: 8gzh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn2002 b:45.2 occ:1.00 SG D:CYS71 2.5 19.8 1.0 SG D:CYS73 2.5 22.8 1.0 SG D:CYS86 2.5 25.0 1.0 CB D:CYS89 3.2 32.3 1.0 CB D:CYS86 3.4 25.0 1.0 O D:GLY74 3.5 26.8 1.0 CB D:CYS71 3.6 19.8 1.0 CB D:CYS73 3.6 22.8 1.0 CG D:LYS75 3.9 29.0 1.0 N D:CYS73 4.0 22.8 1.0 N D:CYS89 4.0 32.3 1.0 CD D:LYS75 4.1 29.0 1.0 CA D:CYS89 4.2 32.3 1.0 CA D:CYS73 4.2 22.8 1.0 SG D:CYS89 4.4 32.3 1.0 N D:GLY74 4.4 26.8 1.0 C D:GLY74 4.5 26.8 1.0 C D:CYS73 4.5 22.8 1.0 CD2 D:TYR76 4.6 26.8 1.0 N D:TRP72 4.6 18.7 1.0 CB D:ARG88 4.7 34.6 1.0 CA D:CYS71 4.9 19.8 1.0 CA D:CYS86 4.9 25.0 1.0 C D:ARG88 5.0 34.6 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc within 5.0Å range: probe atom residue distance (Å) B Occ Z:Zn2001 b:22.3 occ:1.00 SG Z:CYS293 2.5 18.7 1.0 SG Z:CYS296 2.5 18.7 1.0 SG Z:CYS214 2.5 18.7 1.0 SG Z:CYS286 2.5 18.7 1.0 CB Z:CYS296 3.1 18.7 1.0 CB Z:CYS286 3.2 18.7 1.0 CB Z:CYS214 3.3 18.7 1.0 CB Z:CYS293 3.5 18.7 1.0 CA Z:CYS286 3.6 18.7 1.0 NH2 Z:ARG281 4.0 18.7 1.0 N Z:GLU287 4.1 18.7 1.0 N Z:CYS293 4.2 18.7 1.0 N Z:CYS296 4.2 18.7 1.0 CA Z:CYS296 4.2 18.7 1.0 N Z:CYS214 4.2 18.7 1.0 C Z:CYS286 4.3 18.7 1.0 CA Z:CYS214 4.4 18.7 1.0 CA Z:CYS293 4.4 18.7 1.0 N Z:CYS286 4.7 18.7 1.0 CG2 Z:THR216 4.8 18.7 1.0

L.L.You, L.Q.Shen, Y.Zhang. Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc Proc.Natl.Acad.Sci.Usa 2023.
ISSN: ESSN 1091-6490