Zinc in PDB 8bpr: Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).

The structure of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). (pdb code 8bpr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction)., PDB code: 8bpr:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:267.6 occ:1.00 SG D:CYS70 2.3 195.0 1.0 SG D:CYS67 2.3 198.4 1.0 SG D:CYS55 2.3 187.0 1.0 SG D:CYS58 2.3 186.5 1.0 CB D:CYS58 3.3 186.5 1.0 CB D:CYS55 3.4 187.0 1.0 CB D:CYS70 3.4 195.0 1.0 CB D:CYS67 3.4 198.4 1.0 N D:CYS67 3.5 198.4 1.0 CA D:CYS67 4.0 198.4 1.0 N D:CYS70 4.1 195.0 1.0 N D:CYS58 4.1 186.5 1.0 CA D:CYS70 4.3 195.0 1.0 CA D:CYS58 4.4 186.5 1.0 O D:CYS67 4.6 198.4 1.0 C D:LEU66 4.6 190.4 1.0 C D:CYS67 4.6 198.4 1.0 CB D:GLU57 4.7 150.5 1.0 CA D:LEU66 4.7 190.4 1.0 C D:GLU57 4.8 150.5 1.0 CA D:CYS55 4.8 187.0 1.0

Zinc binding site 2 out of 3 in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn201 b:400.3 occ:1.00 SG E:CYS67 2.3 324.7 1.0 SG E:CYS70 2.3 332.1 1.0 SG E:CYS55 2.3 388.7 1.0 SG E:CYS58 2.3 384.5 1.0 CB E:CYS55 3.4 388.7 1.0 CB E:CYS67 3.4 324.7 1.0 CB E:CYS58 3.4 384.5 1.0 CB E:CYS70 3.4 332.1 1.0 N E:CYS67 3.7 324.7 1.0 N E:CYS58 4.0 384.5 1.0 CA E:CYS67 4.1 324.7 1.0 N E:CYS70 4.2 332.1 1.0 CA E:CYS58 4.3 384.5 1.0 CA E:CYS70 4.4 332.1 1.0 O E:CYS67 4.7 324.7 1.0 C E:CYS67 4.8 324.7 1.0 CA E:CYS55 4.8 388.7 1.0 C E:LEU66 4.9 324.9 1.0

Zinc binding site 3 out of 3 in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn201 b:122.9 occ:1.00 SG F:CYS67 2.3 131.5 1.0 SG F:CYS70 2.3 134.4 1.0 SG F:CYS58 2.3 97.5 1.0 SG F:CYS55 2.3 115.8 1.0 N F:CYS67 3.2 131.5 1.0 CB F:CYS55 3.4 115.8 1.0 CB F:CYS58 3.4 97.5 1.0 CB F:CYS70 3.4 134.4 1.0 CB F:CYS67 3.4 131.5 1.0 CA F:CYS67 3.7 131.5 1.0 O F:CYS67 3.8 131.5 1.0 N F:CYS58 3.8 97.5 1.0 N F:CYS70 4.1 134.4 1.0 C F:CYS67 4.2 131.5 1.0 C F:LEU66 4.2 110.9 1.0 CA F:CYS58 4.2 97.5 1.0 CA F:LEU66 4.3 110.9 1.0 CB F:LEU66 4.3 110.9 1.0 CA F:CYS70 4.4 134.4 1.0 CA F:CYS55 4.8 115.8 1.0 CB F:GLU57 4.8 122.3 1.0 C F:GLU57 4.9 122.3 1.0 N F:GLU57 5.0 122.3 1.0

S.Nirwal, M.Czarnocki-Cieciura, A.Chaudhary, W.Zajko, K.Skowronek, S.Chamera, M.Figiel, M.Nowotny. Mechanism of Recf-Reco-Recr Cooperation in Bacterial Homologous Recombination Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00967-Z