Atomistry » Zinc » PDB 7zrx-8a57 » 8a3t
Atomistry »
  Zinc »
    PDB 7zrx-8a57 »
      8a3t »

Zinc in PDB 8a3t: S. Cerevisiae Apc/C-CDH1 Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the S. Cerevisiae Apc/C-CDH1 Complex (pdb code 8a3t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the S. Cerevisiae Apc/C-CDH1 Complex, PDB code: 8a3t:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 1 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn201

b:403.7
occ:1.00
 ND1 U:HIS76 2.1 336.0 1.0
SG U:CYS52 2.3 348.1 1.0
SG U:CYS55 2.3 343.0 1.0
SG U:CYS62 2.3 324.6 1.0
CE1 U:HIS76 2.9 336.0 1.0
CG U:HIS76 3.2 336.0 1.0
CB U:CYS55 3.2 343.0 1.0
CB U:CYS62 3.3 324.6 1.0
CB U:CYS52 3.5 348.1 1.0
CB U:HIS76 3.6 336.0 1.0
CA U:CYS62 3.9 324.6 1.0
NE2 U:HIS76 4.0 336.0 1.0
OG U:SER54 4.1 347.1 1.0
CD2 U:HIS76 4.2 336.0 1.0
N U:CYS52 4.2 348.1 1.0
N U:CYS55 4.2 343.0 1.0
CA U:CYS55 4.3 343.0 1.0
CA U:CYS52 4.4 348.1 1.0
O U:GLN61 4.4 314.1 1.0
N U:HIS76 4.5 336.0 1.0
CB U:HIS74 4.5 328.4 1.0
CA U:HIS76 4.7 336.0 1.0
C U:CYS62 4.8 324.6 1.0
O U:CYS52 4.9 348.1 1.0
C U:SER54 4.9 347.1 1.0
C U:CYS52 4.9 348.1 1.0
N U:CYS62 4.9 324.6 1.0

Zinc binding site 2 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 2 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn202

b:386.9
occ:1.00
 ND1 U:HIS71 2.1 340.1 1.0
SG U:CYS69 2.3 338.4 1.0
SG U:CYS91 2.3 351.9 1.0
SG U:CYS94 2.3 357.6 1.0
CE1 U:HIS71 2.8 340.1 1.0
CB U:CYS91 3.1 351.9 1.0
CB U:CYS69 3.1 338.4 1.0
CG U:HIS71 3.2 340.1 1.0
CB U:CYS94 3.3 357.6 1.0
N U:CYS94 3.6 357.6 1.0
CB U:HIS71 3.7 340.1 1.0
NE2 U:HIS71 4.0 340.1 1.0
CA U:CYS94 4.0 357.6 1.0
CD2 U:HIS71 4.2 340.1 1.0
CB U:MET93 4.4 352.8 1.0
CA U:CYS69 4.5 338.4 1.0
C U:MET93 4.5 352.8 1.0
CA U:CYS91 4.5 351.9 1.0
O U:CYS69 4.5 338.4 1.0
N U:MET93 4.7 352.8 1.0
C U:CYS69 4.7 338.4 1.0
CA U:MET93 4.8 352.8 1.0
C U:CYS94 4.8 357.6 1.0
N U:HIS71 4.9 340.1 1.0
CG U:MET93 4.9 352.8 1.0
CA U:HIS71 4.9 340.1 1.0
C U:CYS91 4.9 351.9 1.0
N U:ARG95 5.0 354.4 1.0

Zinc binding site 3 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 3 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn203

b:350.6
occ:1.00
 ND1 U:HIS74 2.1 328.4 1.0
SG U:CYS44 2.3 332.1 1.0
SG U:CYS77 2.3 331.3 1.0
SG U:CYS41 2.3 325.8 1.0
CB U:CYS41 2.8 325.8 1.0
CE1 U:HIS74 3.0 328.4 1.0
CG U:HIS74 3.1 328.4 1.0
CB U:CYS44 3.2 332.1 1.0
CB U:CYS77 3.3 331.3 1.0
CB U:HIS74 3.4 328.4 1.0
N U:CYS44 3.8 332.1 1.0
N U:HIS74 4.0 328.4 1.0
CB U:CYS52 4.1 348.1 1.0
CA U:CYS44 4.1 332.1 1.0
NE2 U:HIS74 4.2 328.4 1.0
CD2 U:HIS74 4.2 328.4 1.0
CA U:HIS74 4.3 328.4 1.0
CA U:CYS41 4.3 325.8 1.0
CA U:CYS77 4.7 331.3 1.0
CA U:CYS52 4.8 348.1 1.0
C U:CYS44 4.9 332.1 1.0
C U:CYS41 4.9 325.8 1.0
C U:ILE43 5.0 327.7 1.0
CB U:ILE43 5.0 327.7 1.0
N U:ARG45 5.0 330.2 1.0

Reference:

D.Barford, E.Vazquez-Fernandez, Z.Zhang, J.Yang. Cryo-Em Structure of the S. Cerevisiae Apc/C-CDH1 Complex To Be Published.
Page generated: Fri Aug 22 08:08:05 2025

Last articles

Zn in 8XY6
Zn in 8XXT
Zn in 8XZC
Zn in 8XZD
Zn in 8XZB
Zn in 8XZ8
Zn in 8XZA
Zn in 8XYZ
Zn in 8XYO
Zn in 8XVS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy