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Zinc in PDB, part 186 (files: 7401-7440), PDB 3wus-3zme

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 7401-7440 (PDB 3wus-3zme).
  1. 3wus (Zn: 2) - Crystal Structure of the Vif-Binding Domain of Human APOBEC3F
  2. 3wv1 (Zn: 4) - Crystal Structure of the Catalytic Domain of Mmp-13 Complexed with 4- (2-((6-Fluoro-2-((3-Methoxybenzyl)Carbamoyl)-4-Oxo-3,4- Dihydroquinazolin-5-Yl)Oxy)Ethyl)Benzoic Acid
    Other atoms: F (2); Ca (4); Na (2);
  3. 3wv2 (Zn: 4) - Crystal Structure of the Catalytic Domain of Mmp-13 Complexed with N- (3-Methoxybenzyl)-4-Oxo-3,4-Dihydroquinazoline-2-Carboxamide
    Other atoms: Ca (4); Na (2);
  4. 3wv3 (Zn: 4) - Crystal Structure of the Catalytic Domain of Mmp-13 Complexed with N- (3-Methoxybenzyl)-4-Oxo-3,4-Dihydrothieno[2,3-D]Pyrimidine-2- Carboxamide
    Other atoms: Ca (4); Na (2);
  5. 3wv6 (Zn: 2) - Crystal Structure of A Protease-Resistant Mutant Form of Human Galectin-9
  6. 3wwl (Zn: 1) - Crystal Structure of Lysine Biosynthetic Amino Acid Carrier Protein Lysw From Thermus Thermophilus Conjugated with Alpha-Aminoadipate
  7. 3wwn (Zn: 1) - Crystal Structure of Lysz From Thermus Thermophilus Complex with Lysw
  8. 3wwq (Zn: 4) - Crystal Structure of FAAP20 Ubz Domain in Complex with LYS63-Linked Diubiquitin
  9. 3wx1 (Zn: 2) - Mouse Cereblon Thalidomide Binding Domain, Selenomethionine Derivative
  10. 3wx2 (Zn: 2) - Mouse Cereblon Thalidomide Binding Domain, Native
  11. 3wx7 (Zn: 2) - Crystal Structure of Cod
    Other atoms: Ca (2);
  12. 3wxa (Zn: 10) - X-Ray Crystal Structural Analysis of the Complex Between Alg-2 and SEC31A Peptide
  13. 3wxc (Zn: 4) - Crystal Structure of Imp-1 Metallo-Beta-Lactamase Complexed with A 3- Aminophtalic Acid Inhibitor
  14. 3wyk (Zn: 2) - Crystal Structure of the Catalytic Domain of PDE10A Complexed with 3- (1-Phenyl-1H-Pyrazol-5-Yl)-1-(3-(Trifluoromethyl)Phenyl)Pyridazin- 4(1H)-One
    Other atoms: F (6); Mg (2);
  15. 3wyl (Zn: 2) - Crystal Structure of the Catalytic Domain of PDE10A Complexed with 5- Methoxy-3-(1-Phenyl-1H-Pyrazol-5-Yl)-1-(3-(Trifluoromethyl)Phenyl) Pyridazin-4(1H)-One
    Other atoms: F (6); Mg (2);
  16. 3wym (Zn: 2) - Crystal Structure of the Catalytic Domain of PDE10A Complexed with 1- (2-Fluoro-4-(1H-Pyrazol-1-Yl)Phenyl)-5-Methoxy-3-(1-Phenyl-1H- Pyrazol-5-Yl)Pyridazin-4(1H)-One
    Other atoms: F (2); Mg (2);
  17. 3x0d (Zn: 1) - Crystal Structure of C.Elegans PRMT7 in Complex with Sah (P43212)
  18. 3x17 (Zn: 2) - Crystal Structure of Metagenome-Derived Glycoside Hydrolase Family 9 Endoglucanase
    Other atoms: Ca (4);
  19. 3x1l (Zn: 1) - Crystal Structure of the Crispr-Cas Rna Silencing Cmr Complex Bound to A Target Analog
    Other atoms: Mg (1);
  20. 3x2q (Zn: 2) - X-Ray Structure of Cyanide-Bound Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State at 2.0 Angstrom Resolution
    Other atoms: Mg (2); Fe (4); Cu (6); Na (2);
  21. 3zbv (Zn: 1) - Crystal Structure of Murine Angiogenin-2
  22. 3zbw (Zn: 2) - Crystal Structure of Murine Angiogenin-3
  23. 3zd6 (Zn: 1) - Snapshot 1 of Rig-I Scanning on Rna Duplex
  24. 3zd7 (Zn: 1) - Snapshot 3 of Rig-I Scanning on Rna Duplex
    Other atoms: Mg (1);
  25. 3zdr (Zn: 1) - Structure of the Alcohol Dehydrogenase (Adh) Domain of A Bifunctional Adhe Dehydrogenase From Geobacillus Thermoglucosidasius Ncimb 11955
  26. 3zdu (Zn: 2) - Crystal Structure of the Human CDKL3 Kinase Domain
    Other atoms: Na (1);
  27. 3ze3 (Zn: 1) - Crystal Structure of the Integral Membrane Diacylglycerol Kinase - DELTA7
    Other atoms: Na (2);
  28. 3zeu (Zn: 2) - Structure of A Salmonella Typhimurium Ygjd-Yeaz Heterodimer Bound to Atpgammas
    Other atoms: Mg (4); Cl (4);
  29. 3zfj (Zn: 20) - N-Terminal Domain of Pneumococcal Phtd Protein with Bound Zn(II)
  30. 3zfk (Zn: 2) - N-Terminal Truncated Nuclease Domain of Colicin E7
    Other atoms: Cl (2);
  31. 3zg6 (Zn: 1) - The Novel De-Long Chain Fatty Acid Function of Human SIRT6
  32. 3zgo (Zn: 3) - Re-Refined Structure of the Human SIRT2 Apoform
  33. 3zgv (Zn: 2) - Structure of Human SIRT2 in Complex with Adp-Ribose
  34. 3zgz (Zn: 2) - Ternary Complex of E. Coli Leucyl-Trna Synthetase, Trna(Leu) and Toxic Moiety From Agrocin 84 (TM84) in Aminoacylation- Like Conformation
    Other atoms: Mg (7);
  35. 3zi6 (Zn: 1) - Structure of Thermolysin Solved By Sad From Data Collected By Direct Data Collection (Ddc) Using the Grob Robot Goniometer
    Other atoms: Ca (4);
  36. 3zj1 (Zn: 40) - Structure of NAB2P Tandem Zinc Finger 12
  37. 3zj2 (Zn: 40) - Structure of NAB2P Tandem Zinc Finger 34
  38. 3zli (Zn: 2) - Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty
    Other atoms: Fe (2);
  39. 3zlz (Zn: 5) - LYS6-Linked Tri-Ubiquitin
  40. 3zme (Zn: 2) - Structure of the P53 Core Domain Mutant Y220C Bound to the Small Molecule PHIKAN7242
    Other atoms: F (2);
Page generated: Mon Dec 15 11:31:16 2025

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