Atomistry » Zinc » PDB 3x17-3zr9 » 3zj1
Atomistry »
  Zinc »
    PDB 3x17-3zr9 »
      3zj1 »

Zinc in PDB 3zj1: Structure of NAB2P Tandem Zinc Finger 12

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of NAB2P Tandem Zinc Finger 12 (pdb code 3zj1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of NAB2P Tandem Zinc Finger 12, PDB code: 3zj1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3zj1

Go back to Zinc Binding Sites List in 3zj1
Zinc binding site 1 out of 2 in the Structure of NAB2P Tandem Zinc Finger 12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of NAB2P Tandem Zinc Finger 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
NE2 A:HIS278 2.3 0.0 1.0
SG A:CYS274 2.4 0.0 1.0
SG A:CYS262 2.5 0.0 1.0
SG A:CYS268 2.5 0.0 1.0
CE1 A:HIS278 3.3 0.0 1.0
CD2 A:HIS278 3.4 0.0 1.0
HE1 A:HIS278 3.5 0.0 1.0
CB A:CYS274 3.5 0.0 1.0
CB A:CYS268 3.5 0.0 1.0
HB3 A:CYS274 3.6 0.0 1.0
HD2 A:HIS278 3.6 0.0 1.0
CB A:CYS262 3.6 0.0 1.0
HB3 A:CYS268 3.6 0.0 1.0
HB2 A:CYS262 3.6 0.0 1.0
HB2 A:CYS268 3.6 0.0 1.0
HB2 A:CYS274 3.6 0.0 1.0
HB3 A:CYS262 3.8 0.0 1.0
HB2 A:HIS276 4.1 0.0 1.0
HB2 A:LEU270 4.1 0.0 1.0
HB2 A:PHE265 4.3 0.0 1.0
ND1 A:HIS278 4.5 0.0 1.0
HB2 A:LEU264 4.5 0.0 1.0
CG A:HIS278 4.5 0.0 1.0
H A:HIS276 4.6 0.0 1.0
O A:HIS276 4.7 0.0 1.0
HD2 A:PHE265 4.7 0.0 1.0
H A:LEU270 4.8 0.0 1.0
CA A:CYS274 5.0 0.0 1.0
CA A:CYS268 5.0 0.0 1.0
H A:PHE265 5.0 0.0 1.0
CA A:CYS262 5.0 0.0 1.0
H A:LEU264 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 3zj1

Go back to Zinc Binding Sites List in 3zj1
Zinc binding site 2 out of 2 in the Structure of NAB2P Tandem Zinc Finger 12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of NAB2P Tandem Zinc Finger 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.0
occ:1.00
NE2 A:HIS300 2.3 0.0 1.0
SG A:CYS283 2.4 0.0 1.0
SG A:CYS289 2.4 0.0 1.0
SG A:CYS296 2.4 0.0 1.0
CE1 A:HIS300 3.2 0.0 1.0
HE1 A:HIS300 3.2 0.0 1.0
HB2 A:CYS283 3.3 0.0 1.0
CD2 A:HIS300 3.4 0.0 1.0
HB2 A:CYS289 3.4 0.0 1.0
CB A:CYS283 3.5 0.0 1.0
HB2 A:CYS296 3.5 0.0 1.0
CB A:CYS289 3.5 0.0 1.0
CB A:CYS296 3.6 0.0 1.0
HB2 A:PHE298 3.7 0.0 1.0
HD2 A:PHE298 3.7 0.0 1.0
HD2 A:HIS300 3.7 0.0 1.0
HB3 A:CYS296 3.8 0.0 1.0
HB3 A:CYS289 3.8 0.0 1.0
HB3 A:CYS283 3.9 0.0 1.0
HB2 A:LYS291 4.1 0.0 1.0
HG3 A:LYS291 4.3 0.0 1.0
H A:PHE298 4.3 0.0 1.0
ND1 A:HIS300 4.4 0.0 1.0
HB2 A:TYR286 4.4 0.0 1.0
CG A:HIS300 4.5 0.0 1.0
H A:TYR286 4.5 0.0 1.0
HG2 A:LYS291 4.7 0.0 1.0
H A:GLU285 4.7 0.0 1.0
CD2 A:PHE298 4.7 0.0 1.0
CB A:PHE298 4.7 0.0 1.0
HA A:CYS283 4.8 0.0 1.0
CA A:CYS283 4.8 0.0 1.0
HA A:CYS289 4.9 0.0 1.0
CG A:LYS291 4.9 0.0 1.0
CA A:CYS289 4.9 0.0 1.0
CA A:CYS296 4.9 0.0 1.0
CB A:LYS291 5.0 0.0 1.0

Reference:

S.Martinez-Lumbreras, C.M.Santiveri, Y.Mirassou, S.Zorrilla, J.M.Perez-Canadillas. Two Singular Types of Ccch Tandem Zinc Finger in NAB2P Contribute to Polyadenosine Rna Recognition. Structure V. 21 1800 2013.
ISSN: ISSN 0969-2126
PubMed: 23994011
DOI: 10.1016/J.STR.2013.07.019
Page generated: Sat Oct 26 18:28:47 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy