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Zinc in PDB 6yl7: Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei

Enzymatic activity of Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei

All present enzymatic activity of Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei, PDB code: 6yl7 was solved by A.Angeli, M.Ferraroni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.41 / 3.17
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.738, 88.738, 112.428, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 29.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei (pdb code 6yl7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei, PDB code: 6yl7:

Zinc binding site 1 out of 1 in 6yl7

Go back to Zinc Binding Sites List in 6yl7
Zinc binding site 1 out of 1 in the Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Beta Carbonic Anhydrase From the Pathogenic Bacterium Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:0.5
occ:1.00
 NE2 A:HIS102 1.7 99.3 1.0
SG A:CYS105 2.0 89.7 1.0
OD2 A:ASP48 2.1 0.3 1.0
SG A:CYS46 2.2 94.2 1.0
CG A:ASP48 2.5 0.9 1.0
CD2 A:HIS102 2.6 95.5 1.0
CB A:CYS46 2.8 83.7 1.0
CE1 A:HIS102 2.8 0.7 1.0
CB A:CYS105 2.9 96.3 1.0
CB A:ASP48 3.1 0.1 1.0
OD1 A:ASP48 3.2 0.7 1.0
CA A:CYS105 3.3 97.1 1.0
CG A:HIS102 3.8 95.4 1.0
ND1 A:HIS102 3.8 0.7 1.0
C A:CYS105 4.1 0.0 1.0
N A:SER106 4.1 0.6 1.0
CA A:CYS46 4.3 89.5 1.0
CA A:ASP48 4.3 0.4 1.0
N A:ASP48 4.4 98.3 1.0
OG A:SER106 4.6 0.8 1.0
N A:CYS105 4.6 95.8 1.0
O A:ASP48 4.7 0.6 1.0
C A:CYS46 4.8 85.3 1.0
N A:GLY107 4.9 98.9 1.0
O A:HIS102 4.9 0.2 1.0
N A:ALA71 4.9 0.7 1.0
C A:ASP48 5.0 0.4 1.0

Reference:

A.Angeli, M.Ferraroni, M.Pinteala, S.S.Maier, B.C.Simionescu, F.Carta, S.Del Prete, C.Capasso, C.T.Supuran. Crystal Structure of A Tetrameric Type II Beta-Carbonic Anhydrase From the Pathogenic Bacteriumburkholderia Pseudomallei. Molecules V. 25 2020.
ISSN: ESSN 1420-3049
PubMed: 32408533
DOI: 10.3390/MOLECULES25102269
Page generated: Tue Oct 29 15:11:27 2024

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