Zinc in PDB 6yj4: Structure of Yarrowia Lipolytica Complex I at 2.7 A

All present enzymatic activity of Structure of Yarrowia Lipolytica Complex I at 2.7 A:
1.6.5.3; 1.6.99.3; 7.1.1.2;

The structure of Structure of Yarrowia Lipolytica Complex I at 2.7 A also contains other interesting chemical elements:

Iron

(Fe)

28 atoms

The binding sites of Zinc atom in the Structure of Yarrowia Lipolytica Complex I at 2.7 A (pdb code 6yj4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Yarrowia Lipolytica Complex I at 2.7 A, PDB code: 6yj4:

Zinc binding site 1 out of 1 in the Structure of Yarrowia Lipolytica Complex I at 2.7 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Yarrowia Lipolytica Complex I at 2.7 A within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn201 b:55.0 occ:1.00 NE2 R:HIS110 2.0 37.9 1.0 SG R:CYS97 2.2 43.7 1.0 SG R:CYS128 2.3 39.5 1.0 SG R:CYS125 2.4 41.2 1.0 CE1 R:HIS110 2.6 37.9 1.0 CB R:CYS125 3.1 41.2 1.0 CD2 R:HIS110 3.2 37.9 1.0 CB R:CYS97 3.3 43.7 1.0 ND1 R:HIS110 3.7 37.9 1.0 CB R:CYS128 3.9 39.5 1.0 OG1 R:THR130 3.9 43.2 1.0 N R:CYS128 3.9 39.5 1.0 CG R:HIS110 4.1 37.9 1.0 CA R:CYS128 4.4 39.5 1.0 O R:CYS128 4.5 39.5 1.0 C R:CYS97 4.5 43.7 1.0 CA R:CYS97 4.5 43.7 1.0 CA R:CYS125 4.6 41.2 1.0 CB R:TYR127 4.6 37.0 1.0 C R:CYS128 4.7 39.5 1.0 O R:CYS97 4.7 43.7 1.0 N R:ASP98 4.8 45.3 1.0 N R:GLY99 4.8 41.7 1.0

D.N.Grba, J.Hirst. Mitochondrial Complex I Structure Reveals Ordered Water Molecules For Catalysis and Proton Translocation. Nat.Struct.Mol.Biol. V. 27 892 2020.
ISSN: ESSN 1545-9985
PubMed: 32747785
DOI: 10.1038/S41594-020-0473-X