Atomistry » Zinc » PDB 6yhd-6yo2 » 6yif
Atomistry »
  Zinc »
    PDB 6yhd-6yo2 »
      6yif »

Zinc in PDB 6yif: Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A.

Protein crystallography data

The structure of Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A., PDB code: 6yif was solved by M.Serena, P.R.Elliott, F.A.Barr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.43 / 1.81
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 98.863, 98.863, 56.067, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 22.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A. (pdb code 6yif). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A., PDB code: 6yif:

Zinc binding site 1 out of 1 in 6yif

Go back to Zinc Binding Sites List in 6yif
Zinc binding site 1 out of 1 in the Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Chromosomal Passenger Complex (Cpc) Bound to Phosphorylated Histone 3 Peptide at 1.8 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:24.4
occ:1.00
NE2 A:HIS77 2.2 25.0 1.0
SG A:CYS60 2.2 26.6 1.0
SG A:CYS57 2.2 25.1 1.0
SG A:CYS84 2.4 25.4 1.0
HE1 A:HIS77 2.8 32.5 1.0
CE1 A:HIS77 2.8 27.1 1.0
HB2 A:CYS84 2.8 32.1 1.0
H A:CYS60 2.9 31.1 1.0
CB A:CYS84 3.1 26.7 1.0
CB A:CYS57 3.1 23.9 1.0
HB3 A:CYS57 3.1 28.7 1.0
HB2 A:CYS57 3.1 28.7 1.0
HB3 A:CYS84 3.3 32.1 1.0
HB3 A:CYS60 3.3 32.1 1.0
CD2 A:HIS77 3.4 26.9 1.0
CB A:CYS60 3.4 26.8 1.0
N A:CYS60 3.5 25.9 1.0
HB3 A:PHE59 3.6 26.4 1.0
HD2 A:HIS77 3.7 32.3 1.0
HG A:SER81 4.0 46.9 1.0
HB3 A:PHE86 4.0 40.5 1.0
CA A:CYS60 4.1 22.4 1.0
ND1 A:HIS77 4.1 28.7 1.0
HB3 A:SER81 4.2 52.2 1.0
HB2 A:CYS60 4.2 32.1 1.0
H A:PHE59 4.2 28.5 1.0
CG A:HIS77 4.3 25.9 1.0
CA A:CYS57 4.5 21.9 1.0
CA A:CYS84 4.5 29.8 1.0
OG A:SER81 4.5 39.1 1.0
CB A:PHE59 4.6 22.0 1.0
HD1 A:PHE59 4.6 28.5 1.0
C A:PHE59 4.6 32.5 1.0
HG A:LEU87 4.6 77.1 1.0
H A:PHE61 4.7 26.7 1.0
HA A:CYS84 4.7 35.8 1.0
H A:LYS62 4.7 27.5 1.0
HD1 A:HIS77 4.8 34.5 1.0
HA A:CYS57 4.8 26.3 1.0
CB A:SER81 4.8 43.5 1.0
C A:CYS60 4.8 22.9 1.0
CB A:PHE86 4.8 33.7 1.0
HA A:CYS60 4.8 26.8 1.0
HB2 A:PHE86 4.9 40.5 1.0
HB3 A:LYS62 4.9 30.3 1.0
H A:PHE86 4.9 46.1 1.0
HD2 A:PHE86 4.9 30.4 1.0
N A:PHE59 4.9 23.7 1.0
CA A:PHE59 5.0 21.2 1.0

Reference:

M.Serena, R.N.Bastos, P.R.Elliott, F.A.Barr. Molecular Basis of MKLP2-Dependent Aurora B Transport From Chromatin to the Anaphase Central Spindle. J.Cell Biol. V. 219 2020.
ISSN: ESSN 1540-8140
PubMed: 32356865
DOI: 10.1083/JCB.201910059
Page generated: Tue Oct 29 15:07:24 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy