Zinc in PDB 6mif: LIM5 Domain of PINCH1 Protein

The binding sites of Zinc atom in the LIM5 Domain of PINCH1 Protein (pdb code 6mif). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the LIM5 Domain of PINCH1 Protein, PDB code: 6mif:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the LIM5 Domain of PINCH1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LIM5 Domain of PINCH1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.3 occ:1.00 SG A:CYS303 2.3 0.3 1.0 SG A:CYS281 2.3 0.4 1.0 SG A:CYS300 2.3 0.4 1.0 SG A:CYS278 2.3 0.2 1.0 HB2 A:CYS281 2.5 0.3 1.0 HB A:THR280 2.7 0.3 1.0 HB2 A:CYS303 2.8 0.3 1.0 CB A:CYS281 2.9 0.3 1.0 H A:CYS300 3.0 0.2 1.0 CB A:CYS303 3.1 0.3 1.0 HB3 A:CYS300 3.3 0.3 1.0 CB A:CYS300 3.4 0.3 1.0 N A:CYS281 3.5 0.3 1.0 H A:CYS303 3.5 0.2 1.0 C A:THR280 3.6 0.3 1.0 H A:CYS281 3.7 0.3 1.0 HB3 A:CYS281 3.7 0.3 1.0 N A:CYS300 3.7 0.2 1.0 CB A:THR280 3.8 0.3 1.0 CA A:CYS281 3.8 0.3 1.0 CB A:CYS278 3.8 0.2 1.0 HB3 A:CYS303 3.9 0.3 1.0 O A:THR280 3.9 0.4 1.0 HB2 A:CYS278 4.0 0.2 1.0 HB3 A:CYS278 4.0 0.2 1.0 N A:CYS303 4.0 0.2 1.0 HG21 A:VAL299 4.1 1.1 1.0 CA A:CYS303 4.1 0.2 1.0 CA A:CYS300 4.1 0.3 1.0 HG22 A:THR280 4.2 1.0 1.0 HB3 A:LYS302 4.2 0.4 1.0 H A:THR280 4.2 0.2 1.0 CA A:THR280 4.2 0.3 1.0 HA A:CYS281 4.2 0.4 1.0 HB2 A:CYS300 4.3 0.3 1.0 HA A:VAL299 4.4 0.2 1.0 HA A:CYS303 4.4 0.2 1.0 CG2 A:THR280 4.5 0.3 1.0 HG1 A:THR280 4.5 0.9 1.0 O A:CYS300 4.5 0.2 1.0 N A:THR280 4.6 0.3 1.0 OG1 A:THR280 4.7 0.3 1.0 HG23 A:THR280 4.7 1.1 1.0 C A:CYS300 4.7 0.3 1.0 HG22 A:VAL299 4.8 1.0 1.0 C A:VAL299 4.8 0.2 1.0 CG2 A:VAL299 4.9 0.4 1.0 HB A:THR283 5.0 0.2 1.0

Zinc binding site 2 out of 2 in the LIM5 Domain of PINCH1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of LIM5 Domain of PINCH1 Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:0.5 occ:1.00 HB2 A:CYS272 1.9 0.7 1.0 SG A:CYS252 2.3 0.5 1.0 SG A:CYS255 2.3 0.8 1.0 SG A:CYS275 2.3 0.5 1.0 SG A:CYS272 2.3 0.5 1.0 HB3 A:CYS252 2.4 0.4 1.0 CB A:CYS272 2.5 0.4 1.0 CB A:CYS252 2.7 0.3 1.0 HB2 A:CYS252 3.0 0.5 1.0 HB3 A:CYS272 3.1 0.8 1.0 H A:CYS272 3.2 0.3 1.0 HB3 A:CYS255 3.2 1.5 1.0 HB2 A:CYS275 3.3 0.5 1.0 H A:CYS255 3.3 0.4 1.0 CB A:CYS255 3.4 0.8 1.0 HB3 A:HIS254 3.4 1.0 1.0 CB A:CYS275 3.4 0.5 1.0 CA A:CYS272 3.7 0.3 1.0 N A:CYS272 3.7 0.3 1.0 N A:CYS255 3.8 0.5 1.0 HB3 A:CYS275 3.9 0.6 1.0 H A:CYS275 4.0 0.4 1.0 CA A:CYS252 4.1 0.3 1.0 O A:CYS252 4.1 0.3 1.0 HB2 A:CYS255 4.2 1.4 1.0 HA A:CYS272 4.2 0.3 1.0 CA A:CYS255 4.2 0.6 1.0 H A:ARG257 4.3 0.6 1.0 CB A:HIS254 4.4 0.7 1.0 HB2 A:ARG257 4.4 1.8 1.0 HB2 A:HIS254 4.5 1.1 1.0 C A:CYS252 4.5 0.3 1.0 N A:CYS275 4.6 0.4 1.0 H A:HIS254 4.7 0.4 1.0 C A:HIS254 4.7 0.6 1.0 CA A:CYS275 4.7 0.5 1.0 H A:CYS252 4.7 0.3 1.0 HD21 A:ASN274 4.7 0.9 1.0 H A:ASN256 4.7 0.4 1.0 HA A:CYS252 4.7 0.3 1.0 HG2 A:ARG257 4.8 0.9 1.0 C A:CYS272 4.8 0.3 1.0 N A:CYS252 4.9 0.3 1.0 HA A:TRP271 4.9 0.3 1.0 O A:ARG257 4.9 0.4 1.0 HA A:ILE259 4.9 0.4 1.0 C A:TRP271 4.9 0.3 1.0 HB2 A:ASN274 5.0 0.5 1.0 CA A:HIS254 5.0 0.6 1.0

J.Qin, J.Vaynberg. LIM5 Domain of PINCH1 Protein To Be Published.