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Zinc in PDB 5ahr: Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B

Protein crystallography data

The structure of Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B, PDB code: 5ahr was solved by C.K.Allerston, J.A.Newman, M.Vollmar, S.Goubin, D.S.Forese, A.Chaikuad, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.044 / 2.19
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 113.199, 113.199, 125.736, 90.00, 90.00, 90.00
R / Rfree (%) 17.91 / 20.11

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B (pdb code 5ahr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B, PDB code: 5ahr:

Zinc binding site 1 out of 1 in 5ahr

Go back to Zinc Binding Sites List in 5ahr
Zinc binding site 1 out of 1 in the Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2041

b:37.7
occ:0.89
ND1 A:HIS734 2.1 33.5 1.0
OD2 A:ASP815 2.1 35.4 1.0
O A:HOH3027 2.2 43.0 1.0
NE2 A:HIS793 2.3 36.9 1.0
NE2 A:HIS732 2.3 35.7 1.0
O A:HOH3030 2.4 43.0 1.0
CE1 A:HIS734 2.9 39.1 1.0
CD2 A:HIS732 3.1 31.0 1.0
CG A:HIS734 3.2 39.9 1.0
CG A:ASP815 3.2 38.9 1.0
CE1 A:HIS793 3.2 37.3 1.0
CD2 A:HIS793 3.2 38.1 1.0
CE1 A:HIS732 3.4 40.1 1.0
CB A:HIS734 3.6 33.7 1.0
CB A:ASP815 3.6 34.2 1.0
O A:HOH3034 3.9 53.8 1.0
NE2 A:HIS734 4.1 32.7 1.0
NE2 A:HIS737 4.2 41.4 1.0
CD2 A:HIS737 4.2 36.0 1.0
CD2 A:HIS734 4.2 34.7 1.0
CG A:HIS732 4.3 37.4 1.0
OD1 A:ASP815 4.3 36.0 1.0
ND1 A:HIS793 4.3 37.7 1.0
CG A:HIS793 4.4 39.2 1.0
ND1 A:HIS732 4.4 37.8 1.0
O A:HOH3164 4.7 58.3 1.0
NE2 A:HIS994 4.8 37.6 1.0
CE1 A:HIS994 4.8 35.9 1.0

Reference:

C.K.Allerston, J.A.Newman, M.Vollmar, S.Goubin, D.S.Forese, A.Chaikuad, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Crystal Structure of Human Dna Cross-Link Repair 1A, Crystal Form B To Be Published.
Page generated: Sun Oct 27 13:00:18 2024

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