Zinc in PDB 6jf5: K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf5 was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.69 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.072, 76.755, 96.503, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.8

The binding sites of Zinc atom in the K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jf5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jf5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:17.0 occ:1.00 O21 B:K2U202 2.0 22.3 1.0 NE2 B:HIS145 2.0 15.0 1.0 NE2 B:HIS149 2.1 13.7 1.0 SG B:CYS103 2.3 18.8 1.0 C1 B:K2U202 2.7 22.7 1.0 O22 B:K2U202 2.7 22.2 1.0 CE1 B:HIS145 3.0 16.1 1.0 CD2 B:HIS145 3.0 14.7 1.0 CD2 B:HIS149 3.1 12.5 1.0 CE1 B:HIS149 3.1 13.2 1.0 CB B:CYS103 3.3 19.3 1.0 NE2 B:GLN55 3.4 14.1 1.0 O B:HOH315 3.5 22.4 1.0 CA B:CYS103 3.6 19.9 1.0 C2 B:K2U202 4.0 27.7 1.0 CD B:GLN55 4.0 14.7 1.0 ND1 B:HIS145 4.1 14.6 1.0 CG B:HIS145 4.2 14.0 1.0 CG B:HIS149 4.2 12.3 1.0 ND1 B:HIS149 4.2 12.7 1.0 N B:LEU104 4.2 18.5 1.0 OE1 B:GLN55 4.2 13.2 1.0 C B:CYS103 4.4 19.7 1.0 C3 B:K2U202 4.4 30.3 1.0 O B:GLY102 4.5 22.7 1.0 O B:HOH307 4.6 17.3 1.0 N B:CYS103 4.8 18.9 1.0 OE2 B:GLU146 4.9 20.7 1.0 N B:SER105 4.9 16.5 1.0 C4 B:K2U202 5.0 29.3 1.0 OE1 B:GLU146 5.0 20.6 1.0

Zinc binding site 2 out of 2 in the K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:22.2 occ:1.00 O22 A:K2U202 1.8 21.4 1.0 NE2 A:HIS149 2.1 18.1 1.0 NE2 A:HIS145 2.1 20.6 1.0 SG A:CYS103 2.3 23.4 1.0 C1 A:K2U202 2.7 25.7 1.0 O21 A:K2U202 2.8 26.0 1.0 CD2 A:HIS149 3.0 16.4 1.0 CD2 A:HIS145 3.0 20.1 1.0 CE1 A:HIS149 3.1 17.3 1.0 CE1 A:HIS145 3.2 22.4 1.0 CB A:CYS103 3.3 22.7 1.0 NE2 A:GLN55 3.3 17.1 1.0 O A:HOH310 3.6 26.8 1.0 CA A:CYS103 3.7 22.9 1.0 CD A:GLN55 3.9 16.3 1.0 C2 A:K2U202 4.0 34.0 1.0 OE1 A:GLN55 4.1 15.6 1.0 CG A:HIS149 4.2 15.3 1.0 ND1 A:HIS149 4.2 17.2 1.0 CG A:HIS145 4.2 18.4 1.0 ND1 A:HIS145 4.3 20.8 1.0 N A:LEU104 4.3 24.3 1.0 O A:HOH307 4.4 19.8 1.0 C A:CYS103 4.4 22.5 1.0 O A:GLY102 4.6 23.7 1.0 C3 A:K2U202 4.6 38.5 1.0 OE1 A:GLU146 4.8 19.7 1.0 OE2 A:GLU146 4.8 23.6 1.0 N A:CYS103 4.9 20.4 1.0 N A:SER105 4.9 21.6 1.0

I.H.Lee, T.H.Ho, L.W.Kang. K2U Bound Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii To Be Published.