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Zinc in PDB 6j4e: Crystal Structure of the ATWRKY1 Domain

Protein crystallography data

The structure of Crystal Structure of the ATWRKY1 Domain, PDB code: 6j4e was solved by Y.P.Xu, H.Xu, B.Wang, X.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.58 / 3.13
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.000, 99.000, 114.333, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 23.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the ATWRKY1 Domain (pdb code 6j4e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the ATWRKY1 Domain, PDB code: 6j4e:

Zinc binding site 1 out of 1 in 6j4e

Go back to Zinc Binding Sites List in 6j4e
Zinc binding site 1 out of 1 in the Crystal Structure of the ATWRKY1 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the ATWRKY1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:68.6
occ:1.00
NE2 B:HIS166 2.0 64.3 1.0
ND1 B:HIS164 2.0 52.4 1.0
SG B:CYS136 2.1 51.7 1.0
SG B:CYS141 2.2 55.6 1.0
CD2 B:HIS166 2.8 71.3 1.0
CG B:HIS164 3.0 61.0 1.0
CB B:CYS136 3.1 63.9 1.0
CE1 B:HIS164 3.1 61.9 1.0
CE1 B:HIS166 3.1 75.5 1.0
CB B:CYS141 3.1 60.0 1.0
CB B:HIS164 3.2 64.4 1.0
CA B:HIS164 3.9 62.1 1.0
CG B:HIS166 4.0 75.0 1.0
CB B:HIS138 4.1 76.3 1.0
CD2 B:HIS164 4.1 58.8 1.0
ND1 B:HIS166 4.1 78.9 1.0
NE2 B:HIS164 4.1 60.2 1.0
CB B:ALA143 4.4 50.5 1.0
CA B:CYS136 4.5 59.0 1.0
CA B:CYS141 4.5 59.3 1.0
OD1 B:ASP165 4.6 77.9 1.0
N B:ASP165 4.7 69.4 1.0
CD1 B:TYR114 4.8 66.9 1.0
C B:HIS164 4.8 61.8 1.0
N B:HIS138 4.8 67.5 1.0
N B:HIS164 4.9 59.6 1.0
C B:CYS136 4.9 59.5 1.0
CG B:HIS138 5.0 78.7 1.0

Reference:

Y.P.Xu, H.Xu, B.Wang, X.D.Su. Crystal Structure of the ATWRKY1 Domain To Be Published.
Page generated: Thu Aug 21 16:10:59 2025

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