Zinc in PDB 6gcs: Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica

All present enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica:
1.6.5.3; 1.6.99.3;

The structure of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica also contains other interesting chemical elements:

Iron

(Fe)

28 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica (pdb code 6gcs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica, PDB code: 6gcs:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn201 b:0.7 occ:1.00 NE2 M:HIS110 2.0 0.3 1.0 CE1 M:HIS110 2.3 0.3 1.0 SG M:CYS128 2.3 0.6 1.0 SG M:CYS125 2.3 1.0 1.0 SG M:CYS97 2.3 0.9 1.0 CB M:CYS128 2.8 0.6 1.0 CD2 M:HIS110 2.9 0.3 1.0 ND1 M:HIS110 3.2 0.3 1.0 N M:CYS128 3.3 0.6 1.0 CG M:HIS110 3.5 0.3 1.0 CB M:CYS125 3.5 1.0 1.0 CB M:CYS97 3.6 0.9 1.0 CA M:CYS128 3.7 0.6 1.0 CB M:TYR127 3.7 0.3 1.0 C M:TYR127 3.9 0.3 1.0 CA M:TYR127 4.2 0.3 1.0 N M:TYR127 4.4 0.3 1.0 O M:CYS125 4.6 1.0 1.0 O M:TYR127 4.7 0.3 1.0 CA M:CYS125 4.7 1.0 1.0 C M:CYS128 4.8 0.6 1.0 C M:CYS125 4.8 1.0 1.0 C M:CYS97 4.8 0.9 1.0 CG2 M:ILE113 4.8 0.7 1.0 CA M:CYS97 4.8 0.9 1.0 CB M:HIS110 4.8 0.3 1.0 CG M:TYR127 4.9 0.3 1.0 N M:GLY129 5.0 0.9 1.0 N M:ASP98 5.0 0.5 1.0

K.Parey, U.Brandt, H.Xie, D.J.Mills, K.Siegmund, J.Vonck, W.Kuehlbrandt, V.Zickermann. Cryo-Em Structure of Respiratory Complex I at Work. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 30277212
DOI: 10.7554/ELIFE.39213