Zinc in PDB 5xmy: Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER

The structure of Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER, PDB code: 5xmy was solved by S.Zhao, B.Zhang, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.27 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	26.982, 48.096, 52.700, 90.00, 98.16, 90.00
R / Rfree (%)	18.2 / 22.1

The binding sites of Zinc atom in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER (pdb code 5xmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER, PDB code: 5xmy:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:27.8 occ:1.00 SG A:CYS914 2.3 30.2 1.0 SG A:CYS885 2.3 23.8 1.0 SG A:CYS888 2.3 27.4 1.0 SG A:CYS911 2.4 29.3 1.0 CB A:CYS888 3.2 23.6 1.0 CB A:CYS885 3.2 20.4 1.0 CB A:CYS914 3.3 35.8 1.0 CB A:CYS911 3.6 29.6 1.0 N A:CYS888 3.6 30.7 1.0 CA A:CYS888 4.0 23.9 1.0 N A:CYS911 4.0 27.2 1.0 O A:HOH1105 4.1 32.3 1.0 N A:CYS914 4.2 34.7 1.0 CA A:CYS911 4.3 25.4 1.0 CA A:CYS914 4.4 33.8 1.0 CB A:ASP887 4.4 26.0 1.0 CA A:CYS885 4.7 19.2 1.0 C A:ASP887 4.7 34.9 1.0 C A:CYS888 4.8 25.9 1.0 N A:ASP889 4.8 29.9 1.0 O A:CYS911 4.8 34.6 1.0 C A:CYS911 4.9 28.7 1.0 CA A:ASP887 5.0 25.2 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:28.8 occ:1.00 ND1 A:HIS893 2.1 30.2 1.0 SG A:CYS873 2.3 30.1 1.0 SG A:CYS896 2.3 30.8 1.0 SG A:CYS870 2.3 24.5 1.0 CB A:CYS870 3.0 23.4 1.0 CE1 A:HIS893 3.1 24.9 1.0 CG A:HIS893 3.1 31.3 1.0 CB A:CYS896 3.3 31.9 1.0 CB A:CYS873 3.3 36.6 1.0 CB A:HIS893 3.4 30.1 1.0 N A:CYS873 3.8 36.6 1.0 N A:HIS893 4.1 22.1 1.0 CA A:CYS873 4.2 35.7 1.0 NE2 A:HIS893 4.2 29.9 1.0 CD2 A:HIS893 4.2 30.8 1.0 CA A:HIS893 4.4 21.7 1.0 CA A:CYS870 4.5 24.4 1.0 C A:GLY872 4.5 41.5 1.0 O A:CYS870 4.7 27.0 1.0 CA A:CYS896 4.7 26.4 1.0 CA A:GLY872 4.7 31.7 1.0 N A:GLY872 4.8 30.5 1.0 C A:CYS870 4.8 23.9 1.0 C A:CYS873 5.0 37.6 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1001 b:51.1 occ:1.00 SG C:CYS911 2.2 52.7 1.0 SG C:CYS888 2.4 53.6 1.0 SG C:CYS914 2.4 61.8 1.0 SG C:CYS885 2.4 43.4 1.0 CB C:CYS888 3.2 60.1 1.0 CB C:CYS885 3.3 47.2 1.0 CB C:CYS914 3.3 70.0 1.0 N C:CYS888 3.5 67.4 1.0 CB C:CYS911 3.6 55.7 1.0 CA C:CYS888 3.9 61.0 1.0 N C:CYS911 4.2 43.2 1.0 CB C:ASP887 4.3 85.3 1.0 CA C:CYS911 4.4 45.6 1.0 N C:CYS914 4.5 76.8 1.0 C C:ASP887 4.5 74.9 1.0 CA C:CYS914 4.6 71.9 1.0 C C:CYS888 4.7 59.7 1.0 CA C:CYS885 4.7 41.3 1.0 N C:ASP889 4.8 49.0 1.0 CA C:ASP887 4.8 76.0 1.0 OD2 C:ASP887 4.8 95.0 1.0 CG C:ASP887 4.9 92.0 1.0 N C:ASP887 4.9 66.7 1.0 C C:LYS913 4.9 83.2 1.0 C C:CYS911 5.0 54.0 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1002 b:51.3 occ:1.00 ND1 C:HIS893 2.0 47.4 1.0 SG C:CYS870 2.3 43.5 1.0 SG C:CYS896 2.3 54.1 1.0 SG C:CYS873 2.3 51.2 1.0 CG C:HIS893 2.9 51.1 1.0 CE1 C:HIS893 2.9 53.3 1.0 CB C:CYS870 3.2 46.9 1.0 CB C:HIS893 3.3 42.9 1.0 CB C:CYS873 3.3 49.9 1.0 CB C:CYS896 3.4 58.5 1.0 N C:CYS873 4.0 72.9 1.0 NE2 C:HIS893 4.0 52.0 1.0 CD2 C:HIS893 4.0 48.8 1.0 N C:HIS893 4.1 41.0 1.0 CA C:CYS873 4.3 63.2 1.0 CA C:HIS893 4.3 42.7 1.0 CA C:CYS870 4.7 45.1 1.0 CA C:CYS896 4.7 56.7 1.0 C C:GLY872 4.8 81.4 1.0 O C:HIS893 5.0 49.0 1.0 N C:CYS896 5.0 58.5 1.0 O C:CYS870 5.0 59.7 1.0

S.Zhao, B.Zhang, H.Li. Crystal Structure of TAF3 Phd Finger Bound to H3K4ME3Q5SER To Be Published.