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Zinc in PDB 5opj: Beta-L-Arabinofuranosidase

Protein crystallography data

The structure of Beta-L-Arabinofuranosidase, PDB code: 5opj was solved by A.Basle, A.S.Luis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.54 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.210, 96.210, 187.840, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Beta-L-Arabinofuranosidase (pdb code 5opj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Beta-L-Arabinofuranosidase, PDB code: 5opj:

Zinc binding site 1 out of 1 in 5opj

Go back to Zinc Binding Sites List in 5opj
Zinc binding site 1 out of 1 in the Beta-L-Arabinofuranosidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Beta-L-Arabinofuranosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn902

b:30.1
occ:1.00
OE1 A:GLU339 2.0 27.7 1.0
SG A:CYS341 2.4 29.9 1.0
SG A:CYS416 2.4 28.4 1.0
SG A:CYS417 2.4 28.6 1.0
CD A:GLU339 3.1 27.3 1.0
CB A:CYS341 3.2 28.9 1.0
N A:CYS417 3.2 27.1 1.0
CB A:CYS416 3.2 26.8 1.0
CG A:GLU339 3.4 25.8 1.0
CB A:CYS417 3.5 28.0 1.0
CA A:CYS417 3.6 27.1 1.0
C A:CYS416 3.6 26.4 1.0
CA A:CYS416 4.0 26.6 1.0
N A:CYS341 4.0 26.2 1.0
OE2 A:GLU339 4.2 29.8 1.0
CA A:CYS341 4.2 28.5 1.0
CZ A:TYR395 4.4 28.6 1.0
O A:CYS416 4.4 27.2 1.0
C2' A:AHR901 4.5 30.1 1.0
CE2 A:TYR395 4.5 27.6 1.0
CE1 A:TYR395 4.6 28.9 1.0
N A:CYS416 4.7 25.3 1.0
OH A:TYR395 4.7 27.2 1.0
CD2 A:TYR395 4.7 28.0 1.0
O2' A:AHR901 4.8 29.1 1.0
ND2 A:ASN266 4.8 27.8 1.0
OG A:SER420 4.9 29.0 1.0
CD1 A:TYR395 4.9 27.5 1.0
CB A:GLU339 4.9 25.5 1.0
O A:HOH1287 5.0 32.9 1.0
CG A:TYR395 5.0 28.2 1.0

Reference:

A.S.Luis, J.Briggs, X.Zhang, B.Farnell, D.Ndeh, A.Labourel, A.Basle, A.Cartmell, N.Terrapon, K.Stott, E.C.Lowe, R.Mclean, K.Shearer, J.Schuckel, I.Venditto, M.C.Ralet, B.Henrissat, E.C.Martens, S.C.Mosimann, D.W.Abbott, H.J.Gilbert. Dietary Pectic Glycans Are Degraded By Coordinated Enzyme Pathways in Human Colonic Bacteroides. Nat Microbiol V. 3 210 2018.
ISSN: ESSN 2058-5276
PubMed: 29255254
DOI: 10.1038/S41564-017-0079-1
Page generated: Sun Oct 27 23:45:39 2024

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