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Zinc in PDB 5oom: Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna

Enzymatic activity of Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna

All present enzymatic activity of Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna:
3.1.1.29;

Other elements in 5oom:

The structure of Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna also contains other interesting chemical elements:

Magnesium (Mg) 49 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna (pdb code 5oom). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna, PDB code: 5oom:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5oom

Go back to Zinc Binding Sites List in 5oom
Zinc binding site 1 out of 2 in the Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn301

b:79.4
occ:1.00
SG r:CYS70 2.1 69.8 1.0
SG I:CYS64 2.3 19.4 1.0
CB r:CYS73 2.3 69.0 1.0
SG r:CYS108 2.5 58.6 1.0
SG r:CYS73 3.1 69.0 1.0
CB r:CYS70 3.4 69.8 1.0
N r:CYS70 3.4 69.8 1.0
CB I:CYS64 3.5 19.4 1.0
CA r:CYS73 3.6 69.0 1.0
N r:CYS73 3.9 69.0 1.0
CA r:CYS70 4.0 69.8 1.0
CA I:CYS64 4.2 19.4 1.0
CB r:CYS108 4.3 58.6 1.0
CB r:GLN69 4.4 73.7 1.0
C r:GLN69 4.5 73.7 1.0
CE r:LYS78 4.5 58.8 1.0
N r:GLN69 4.5 73.7 1.0
O r:CYS70 4.6 69.8 1.0
C r:CYS70 4.7 69.8 1.0
CA r:GLN69 4.7 73.7 1.0
C r:CYS73 4.8 69.0 1.0

Zinc binding site 2 out of 2 in 5oom

Go back to Zinc Binding Sites List in 5oom
Zinc binding site 2 out of 2 in the Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Native Assembly Intermediate of the Human Mitochondrial Ribosome with Unfolded Interfacial Rrna within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Zn200

b:74.8
occ:1.00
SG 0:CYS113 2.0 51.5 1.0
SG 0:CYS110 2.2 49.2 1.0
SG 0:CYS123 2.3 46.2 1.0
SG 0:CYS126 2.3 49.5 1.0
CB 0:CYS123 2.7 46.2 1.0
CB 0:CYS110 2.9 49.2 1.0
CB 0:CYS126 3.5 49.5 1.0
CB 0:CYS113 3.6 51.5 1.0
N 0:CYS126 4.0 49.5 1.0
CA 0:CYS123 4.2 46.2 1.0
N 0:CYS113 4.3 51.5 1.0
CA 0:CYS126 4.4 49.5 1.0
CA 0:CYS110 4.4 49.2 1.0
CA 0:CYS113 4.5 51.5 1.0
O 0:HIS115 4.7 48.0 1.0
CB 0:TYR125 4.7 50.2 1.0
C 0:CYS123 4.8 46.2 1.0
N 0:CYS123 4.9 46.2 1.0
C 0:CYS110 5.0 49.2 1.0

Reference:

A.Brown, S.Rathore, D.Kimanius, S.Aibara, X.C.Bai, J.Rorbach, A.Amunts, V.Ramakrishnan. Structures of the Human Mitochondrial Ribosome in Native States of Assembly. Nat. Struct. Mol. Biol. V. 24 866 2017.
ISSN: ESSN 1545-9985
PubMed: 28892042
DOI: 10.1038/NSMB.3464
Page generated: Sun Oct 27 23:45:43 2024

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