Zinc in PDB 5f9y: Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp

The structure of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp, PDB code: 5f9y was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.61 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	90.870, 110.140, 127.710, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.3

The binding sites of Zinc atom in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp (pdb code 5f9y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp, PDB code: 5f9y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn702 b:76.2 occ:1.00 SG A:CYS621 2.4 62.9 1.0 SG A:CYS626 2.5 62.6 1.0 SG A:CYS671 2.7 65.1 1.0 CB A:CYS626 3.3 69.1 1.0 O A:PHE673 3.4 0.4 1.0 CB A:CYS671 3.4 67.5 1.0 CB A:CYS621 3.5 70.7 1.0 N A:CYS621 4.0 64.6 1.0 CD1 A:TRP620 4.0 59.2 1.0 NE1 A:TRP620 4.2 59.5 1.0 CB A:LYS676 4.3 0.9 1.0 CA A:CYS621 4.4 67.5 1.0 C A:PHE673 4.5 0.1 1.0 CA A:CYS626 4.7 69.7 1.0 CB A:PHE673 4.9 99.2 1.0 CA A:CYS671 4.9 69.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn702 b:82.6 occ:1.00 SG B:CYS626 2.4 74.4 1.0 SG B:CYS621 2.4 75.3 1.0 CB B:CYS674 2.6 87.3 1.0 SG B:CYS671 2.6 77.1 1.0 CB B:CYS671 3.4 81.7 1.0 CB B:CYS626 3.5 74.4 1.0 CB B:CYS621 3.6 78.0 1.0 N B:CYS674 3.7 83.8 1.0 CA B:CYS674 3.7 86.8 1.0 SG B:CYS674 3.7 92.7 1.0 N B:CYS621 4.1 76.6 1.0 CD1 B:TRP620 4.1 70.0 1.0 NE1 B:TRP620 4.3 69.8 1.0 C B:PHE673 4.4 83.9 1.0 CA B:CYS621 4.5 77.7 1.0 C B:CYS674 4.6 88.7 1.0 CB B:PHE673 4.8 81.7 1.0 N B:PHE673 4.9 80.3 1.0 O B:CYS674 4.9 87.7 1.0 CA B:CYS671 4.9 82.7 1.0 CA B:CYS626 4.9 76.0 1.0 CA B:PHE673 4.9 82.6 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, D.Fox Iii, D.Lorimer, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Proline and Amp To Be Published.