Atomistry » Zinc » PDB 5cdt-5cvm » 5chj
Atomistry »
  Zinc »
    PDB 5cdt-5cvm »
      5chj »

Zinc in PDB 5chj: Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)

Enzymatic activity of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)

All present enzymatic activity of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23):
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23), PDB code: 5chj was solved by V.N.Malashkevich, R.Toro, S.Lefurgy, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.74 / 1.36
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.294, 57.161, 83.229, 90.00, 91.67, 90.00
R / Rfree (%) 16.3 / 19.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) (pdb code 5chj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23), PDB code: 5chj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 1 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:27.1
occ:1.00
 O A:HOH829 2.1 32.2 1.0
O A:HOH635 2.1 18.9 1.0
NE2 A:HIS160 2.1 19.1 1.0
O A:HOH818 2.1 22.0 1.0
CD2 A:HIS160 3.0 19.7 1.0
HD2 A:HIS160 3.1 23.6 1.0
CE1 A:HIS160 3.2 21.2 1.0
HE1 A:HIS160 3.4 25.4 1.0
HE21 A:GLN132 3.6 28.9 1.0
HE1 A:TRP95 3.8 19.8 1.0
HZ2 A:TRP95 3.9 13.1 1.0
O A:HOH549 4.1 33.2 1.0
O A:HOH794 4.2 37.7 1.0
CG A:HIS160 4.2 15.7 1.0
HE3 A:MET131 4.2 28.8 1.0
NE2 A:GLN132 4.3 24.0 1.0
ND1 A:HIS160 4.3 20.3 1.0
NE1 A:TRP95 4.3 16.5 1.0
HE22 A:GLN132 4.4 28.9 1.0
HD23 A:LEU161 4.5 9.8 1.0
CZ2 A:TRP95 4.5 10.9 1.0
OD1 A:ASN128 4.6 36.9 1.0
CE2 A:TRP95 4.7 12.1 1.0
HD21 A:LEU161 4.9 9.8 1.0
HB2 A:ASN164 5.0 13.3 1.0

Zinc binding site 2 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 2 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:13.2
occ:1.00
 ND1 A:HIS39 2.0 12.1 1.0
O A:HOH540 2.1 14.2 1.0
O A:HOH836 2.1 18.7 1.0
O A:HOH807 2.1 25.1 1.0
CE1 A:HIS39 2.9 12.3 1.0
HE1 A:HIS39 3.0 14.7 1.0
CG A:HIS39 3.1 11.4 1.0
HB3 A:HIS39 3.2 14.1 1.0
HA A:HIS39 3.4 13.2 1.0
CB A:HIS39 3.5 11.8 1.0
CA A:HIS39 4.0 11.0 1.0
O A:ALA38 4.0 11.8 1.0
NE2 A:HIS39 4.1 12.8 1.0
O A:HOH698 4.2 16.4 1.0
CD2 A:HIS39 4.2 11.7 1.0
O A:HOH756 4.3 20.4 1.0
HB2 A:HIS39 4.4 14.1 1.0
O A:HOH847 4.5 29.3 1.0
HD23 A:LEU8 4.5 37.2 1.0
N A:HIS39 4.8 10.7 1.0
C A:ALA38 4.8 11.1 1.0
O A:HOH949 4.8 41.3 1.0
HE2 A:HIS39 4.8 15.4 1.0
H A:TYR40 4.9 13.2 1.0

Zinc binding site 3 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 3 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:15.7
occ:1.00
 OD2 A:ASP126 2.0 15.5 1.0
NE2 B:HIS147 2.0 5.7 1.0
OE1 A:GLU124 2.0 17.9 1.0
O B:HOH776 2.1 28.7 1.0
CD A:GLU124 2.6 10.5 1.0
OE2 A:GLU124 2.6 27.0 1.0
CG A:ASP126 2.7 17.9 1.0
OD1 A:ASP126 2.9 23.6 1.0
CE1 B:HIS147 2.9 8.3 1.0
HE1 B:HIS147 3.0 9.9 1.0
HZ3 A:LYS130 3.0 30.6 1.0
CD2 B:HIS147 3.1 7.5 1.0
HB3 B:PRO296 3.3 9.7 1.0
HD2 B:HIS147 3.3 9.0 1.0
HD3 B:PRO296 3.6 14.6 1.0
HZ1 A:LYS130 3.6 30.6 1.0
HA A:GLU124 3.7 18.9 1.0
NZ A:LYS130 3.7 25.5 1.0
HE1 B:TYR142 4.0 13.3 1.0
HG3 B:PRO296 4.0 11.6 1.0
ND1 B:HIS147 4.1 9.2 1.0
CG A:GLU124 4.1 22.4 1.0
HZ2 A:LYS130 4.1 30.6 1.0
O A:HOH567 4.1 19.9 1.0
CB B:PRO296 4.1 8.1 1.0
CB A:ASP126 4.1 17.3 1.0
CG B:HIS147 4.2 8.1 1.0
CD B:PRO296 4.3 12.2 1.0
CG B:PRO296 4.3 9.7 1.0
HB2 A:ASP126 4.4 20.8 1.0
CE1 B:TYR142 4.4 11.1 1.0
HB3 A:ASP126 4.4 20.8 1.0
HG3 A:GLU124 4.5 26.9 1.0
HD1 B:TYR142 4.5 10.7 1.0
CA A:GLU124 4.5 15.8 1.0
HA B:PRO296 4.5 8.2 1.0
N B:PRO296 4.5 8.9 1.0
HG2 A:GLU124 4.6 26.9 1.0
HB3 A:GLU124 4.6 19.8 1.0
CB A:GLU124 4.7 16.5 1.0
CA B:PRO296 4.7 6.8 1.0
CD1 B:TYR142 4.7 8.9 1.0
HD1 B:HIS147 4.8 11.1 1.0
O A:GLU124 4.8 16.3 1.0
HB2 B:PRO296 4.9 9.7 1.0
HE3 A:LYS130 4.9 26.9 1.0
CE A:LYS130 4.9 22.4 1.0

Zinc binding site 4 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 4 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:40.3
occ:1.00
 ND1 A:HIS185 2.0 26.4 1.0
O A:HOH837 2.1 41.0 1.0
O A:HOH771 2.7 47.5 1.0
CE1 A:HIS185 2.9 26.6 1.0
HE1 A:HIS185 3.0 31.9 1.0
CG A:HIS185 3.1 22.5 1.0
HB3 A:HIS185 3.2 21.3 1.0
HA A:HIS185 3.6 14.8 1.0
CB A:HIS185 3.6 17.7 1.0
HB3 A:PRO180 3.9 16.1 1.0
HG3 A:PRO180 4.0 18.5 1.0
NE2 A:HIS185 4.0 26.4 1.0
CA A:HIS185 4.1 12.3 1.0
CD2 A:HIS185 4.2 24.8 1.0
O A:HOH817 4.2 31.0 1.0
HA A:PRO180 4.3 14.2 1.0
HB2 A:HIS185 4.5 21.3 1.0
O A:HOH611 4.6 24.4 1.0
CB A:PRO180 4.7 13.4 1.0
CG A:PRO180 4.8 15.4 1.0
HE2 A:HIS185 4.8 31.7 1.0
O A:HIS185 5.0 18.0 1.0
CA A:PRO180 5.0 11.8 1.0

Zinc binding site 5 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 5 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:29.8
occ:1.00
 OE2 A:GLU220 2.1 11.8 1.0
ND1 A:HIS160 2.2 20.3 1.0
O A:HOH839 2.3 40.0 1.0
O A:HOH537 2.9 37.6 1.0
O A:HOH741 2.9 36.5 1.0
CE1 A:HIS160 3.1 21.2 1.0
CD A:GLU220 3.2 8.9 1.0
HD23 A:LEU217 3.2 13.0 1.0
HE1 A:HIS160 3.2 25.4 1.0
HD22 A:LEU217 3.2 13.0 1.0
HB2 A:HIS160 3.3 11.3 1.0
CG A:HIS160 3.3 15.7 1.0
HB3 A:PHE170 3.5 11.2 1.0
CD2 A:LEU217 3.5 10.8 1.0
OE1 A:GLU220 3.6 8.1 1.0
HD21 A:LEU217 3.6 13.0 1.0
HB2 A:PHE170 3.7 11.2 1.0
CB A:HIS160 3.7 9.4 1.0
HA A:HIS160 3.8 7.6 1.0
CB A:PHE170 4.1 9.3 1.0
H A:PHE170 4.2 9.0 1.0
NE2 A:HIS160 4.3 19.1 1.0
CA A:HIS160 4.3 6.3 1.0
O A:HOH888 4.4 22.2 1.0
HA A:LEU217 4.4 11.2 1.0
O A:HOH707 4.4 16.0 1.0
CD2 A:HIS160 4.4 19.7 1.0
O A:HOH921 4.5 28.9 1.0
O A:HOH719 4.5 24.7 1.0
CG A:GLU220 4.6 7.6 1.0
HB3 A:HIS160 4.6 11.3 1.0
HG2 A:GLU220 4.6 9.1 1.0
HG3 A:GLU220 4.9 9.1 1.0
CG A:PHE170 4.9 6.1 1.0
N A:PHE170 5.0 7.5 1.0
CG A:LEU217 5.0 9.6 1.0

Zinc binding site 6 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 6 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:26.8
occ:1.00
 O B:HOH808 2.1 27.2 1.0
O B:HOH746 2.1 21.4 1.0
NE2 B:HIS160 2.1 13.2 1.0
O B:ACT408 2.1 31.6 1.0
OXT B:ACT408 2.7 34.6 1.0
C B:ACT408 2.7 25.9 1.0
CE1 B:HIS160 3.1 15.5 1.0
CD2 B:HIS160 3.1 11.5 1.0
HE1 B:HIS160 3.2 18.6 1.0
HD2 B:HIS160 3.3 13.8 1.0
HE21 B:GLN132 3.8 26.5 1.0
O B:HOH799 3.9 39.0 1.0
HE1 B:TRP95 3.9 17.5 1.0
HZ2 B:TRP95 4.0 14.4 1.0
CH3 B:ACT408 4.2 22.2 1.0
ND1 B:HIS160 4.2 17.3 1.0
HE1 B:MET131 4.2 30.7 1.0
CG B:HIS160 4.2 13.4 1.0
O B:HOH693 4.4 27.7 1.0
NE1 B:TRP95 4.5 14.6 1.0
NE2 B:GLN132 4.5 22.1 1.0
OD1 B:ASN128 4.5 35.9 1.0
H1 B:ACT408 4.5 26.6 1.0
HE22 B:GLN132 4.6 26.5 1.0
HD23 B:LEU161 4.6 9.5 1.0
H2 B:ACT408 4.6 26.6 1.0
CZ2 B:TRP95 4.6 12.0 1.0
H3 B:ACT408 4.8 26.6 1.0
CE2 B:TRP95 4.9 12.4 1.0
HB2 B:ASN164 5.0 16.7 1.0
HD1 B:HIS160 5.0 20.8 1.0

Zinc binding site 7 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 7 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:15.3
occ:1.00
 OXT B:ACT409 2.0 20.4 1.0
ND1 B:HIS39 2.0 13.0 1.0
O B:ACT409 2.0 26.5 1.0
O B:HOH557 2.1 15.5 1.0
C B:ACT409 2.4 28.8 1.0
CE1 B:HIS39 2.9 14.4 1.0
HE1 B:HIS39 3.0 17.3 1.0
CG B:HIS39 3.1 12.6 1.0
HB3 B:HIS39 3.2 14.6 1.0
HA B:HIS39 3.4 15.9 1.0
CB B:HIS39 3.6 12.2 1.0
CH3 B:ACT409 3.8 26.8 1.0
CA B:HIS39 4.0 13.2 1.0
NE2 B:HIS39 4.0 15.4 1.0
O B:ALA38 4.1 13.8 1.0
CD2 B:HIS39 4.2 17.2 1.0
O B:HOH561 4.2 22.6 1.0
H2 B:ACT409 4.2 32.1 1.0
H1 B:ACT409 4.4 32.1 1.0
O B:HOH898 4.4 21.9 1.0
H3 B:ACT409 4.4 32.1 1.0
HB2 B:HIS39 4.5 14.6 1.0
HD22 B:LEU8 4.6 36.2 1.0
H B:TYR40 4.8 14.9 1.0
N B:HIS39 4.8 13.0 1.0
HE2 B:HIS39 4.8 18.4 1.0
C B:ALA38 4.8 13.5 1.0

Zinc binding site 8 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 8 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn403

b:14.4
occ:1.00
 OE1 B:GLU124 2.0 19.7 1.0
OD2 B:ASP126 2.0 14.2 1.0
O B:ACT406 2.1 38.6 1.0
CD B:GLU124 2.5 14.9 1.0
OE2 B:GLU124 2.5 26.6 1.0
CG B:ASP126 2.7 15.4 1.0
OD1 B:ASP126 2.7 19.5 1.0
H1 B:ACT406 2.8 14.4 1.0
HZ1 B:LYS130 3.0 27.4 1.0
C B:ACT406 3.0 22.0 1.0
CH3 B:ACT406 3.4 12.0 1.0
HZ2 B:LYS130 3.7 27.4 1.0
HA B:GLU124 3.7 20.7 1.0
NZ B:LYS130 3.7 22.9 1.0
O B:HOH513 4.0 20.2 1.0
CG B:GLU124 4.0 19.2 1.0
HZ3 B:LYS130 4.0 27.4 1.0
H2 B:ACT406 4.0 14.4 1.0
H3 B:ACT406 4.1 14.4 1.0
OXT B:ACT406 4.2 15.6 1.0
CB B:ASP126 4.2 16.4 1.0
HB3 B:ASP126 4.5 19.6 1.0
HG3 B:GLU124 4.5 23.0 1.0
HB2 B:ASP126 4.5 19.6 1.0
HG2 B:GLU124 4.5 23.0 1.0
HB3 B:GLU124 4.5 20.6 1.0
CA B:GLU124 4.5 17.2 1.0
CB B:GLU124 4.6 17.2 1.0
O B:GLU124 4.8 14.1 1.0
CE B:LYS130 4.9 21.5 1.0
HE3 B:LYS130 4.9 25.8 1.0

Zinc binding site 9 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 9 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn404

b:26.8
occ:1.00
 ND1 B:HIS185 2.0 20.4 1.0
O B:HOH781 2.1 38.2 1.0
O B:HOH804 2.1 35.9 1.0
CE1 B:HIS185 2.8 22.9 1.0
HE1 B:HIS185 2.9 27.4 1.0
CG B:HIS185 3.1 20.0 1.0
HB3 B:HIS185 3.2 21.9 1.0
CB B:HIS185 3.6 18.3 1.0
O B:HOH689 3.7 33.2 1.0
HA B:HIS185 3.8 17.4 1.0
NE2 B:HIS185 4.0 25.6 1.0
CD2 B:HIS185 4.2 24.6 1.0
HB3 B:PRO180 4.2 19.2 1.0
CA B:HIS185 4.3 14.5 1.0
HB2 B:HIS185 4.5 21.9 1.0
HG3 B:PRO180 4.5 20.4 1.0
HA B:PRO180 4.7 17.5 1.0
HE2 B:HIS185 4.8 30.8 1.0
O B:HIS185 4.9 20.2 1.0

Zinc binding site 10 out of 10 in 5chj

Go back to Zinc Binding Sites List in 5chj
Zinc binding site 10 out of 10 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Fox-4 Cephamycinase Complexed with Cephalothin Batsi (SM23) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn405

b:34.2
occ:1.00
 HD1 B:HIS160 1.3 20.8 1.0
OE2 B:GLU220 2.1 11.2 1.0
ND1 B:HIS160 2.2 17.3 1.0
O B:HOH771 2.3 42.7 1.0
O B:HOH774 2.3 37.2 1.0
O B:HOH539 2.5 39.1 1.0
CE1 B:HIS160 3.1 15.5 1.0
CD B:GLU220 3.2 11.4 1.0
HB2 B:HIS160 3.2 11.7 1.0
HE1 B:HIS160 3.3 18.6 1.0
CG B:HIS160 3.3 13.4 1.0
HD23 B:LEU217 3.3 14.1 1.0
HD22 B:LEU217 3.4 14.1 1.0
HB3 B:PHE170 3.5 10.9 1.0
OE1 B:GLU220 3.5 11.2 1.0
HA B:HIS160 3.6 10.3 1.0
HB2 B:PHE170 3.6 10.9 1.0
CB B:HIS160 3.7 9.8 1.0
CD2 B:LEU217 3.7 11.8 1.0
HD21 B:LEU217 3.8 14.1 1.0
CB B:PHE170 4.0 9.1 1.0
H B:PHE170 4.1 14.5 1.0
CA B:HIS160 4.1 8.6 1.0
NE2 B:HIS160 4.3 13.2 1.0
O B:HOH674 4.3 27.6 1.0
CD2 B:HIS160 4.4 11.5 1.0
HA B:LEU217 4.4 11.9 1.0
O B:HOH683 4.4 17.5 1.0
O B:HOH862 4.5 36.9 1.0
O B:HOH904 4.5 29.2 1.0
HB3 B:HIS160 4.5 11.7 1.0
CG B:GLU220 4.5 9.5 1.0
O B:HOH619 4.6 22.9 1.0
HG2 B:GLU220 4.6 11.4 1.0
HG3 B:GLU220 4.9 11.4 1.0
N B:PHE170 4.9 12.1 1.0
CG B:PHE170 4.9 8.7 1.0

Reference:

V.N.Malashkevich, R.Toro, S.Lefurgy, S.C.Almo. Crystal Structure of Fox-4 Cephamycinase Complexed with Batsi (SM23) To Be Published.
Page generated: Sun Oct 27 14:20:37 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy