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Zinc in PDB 5brv: Catalytic Improvement of An Artificial Metalloenzyme By Computational Design

Enzymatic activity of Catalytic Improvement of An Artificial Metalloenzyme By Computational Design

All present enzymatic activity of Catalytic Improvement of An Artificial Metalloenzyme By Computational Design:
4.2.1.1;

Protein crystallography data

The structure of Catalytic Improvement of An Artificial Metalloenzyme By Computational Design, PDB code: 5brv was solved by T.Heinisch, M.Pellizzoni, M.Duerrenberger, C.E.Tinberg, V.Koehler, J.Klehr, D.Haeussinger, D.Baker, T.R.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.96 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.230, 41.544, 72.130, 90.00, 104.11, 90.00
R / Rfree (%) 18.5 / 23

Other elements in 5brv:

The structure of Catalytic Improvement of An Artificial Metalloenzyme By Computational Design also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Iridium (Ir) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Catalytic Improvement of An Artificial Metalloenzyme By Computational Design (pdb code 5brv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Catalytic Improvement of An Artificial Metalloenzyme By Computational Design, PDB code: 5brv:

Zinc binding site 1 out of 1 in 5brv

Go back to Zinc Binding Sites List in 5brv
Zinc binding site 1 out of 1 in the Catalytic Improvement of An Artificial Metalloenzyme By Computational Design


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Catalytic Improvement of An Artificial Metalloenzyme By Computational Design within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:12.8
occ:1.00
 N2 A:9TH302 2.0 14.5 1.0
NE2 A:HIS94 2.1 10.2 1.0
ND1 A:HIS119 2.1 12.8 1.0
NE2 A:HIS96 2.2 12.0 1.0
O2 A:9TH302 3.0 15.8 1.0
CE1 A:HIS94 3.0 10.6 1.0
CE1 A:HIS119 3.0 12.8 1.0
CD2 A:HIS94 3.0 11.2 1.0
S1 A:9TH302 3.1 17.3 1.0
CD2 A:HIS96 3.1 11.3 1.0
CE1 A:HIS96 3.2 12.8 1.0
CG A:HIS119 3.2 11.7 1.0
CB A:HIS119 3.6 11.0 1.0
O A:HOH502 3.7 30.8 1.0
OG1 A:THR198 3.9 11.7 1.0
OE1 A:GLU106 3.9 16.2 1.0
O1 A:9TH302 4.1 16.4 1.0
ND1 A:HIS94 4.1 11.2 1.0
NE2 A:HIS119 4.2 12.1 1.0
CG A:HIS94 4.2 10.2 1.0
C32 A:9TH302 4.2 19.8 1.0
CG A:HIS96 4.2 11.4 1.0
ND1 A:HIS96 4.2 11.7 1.0
CD2 A:HIS119 4.3 12.7 1.0
CD A:GLU106 4.9 17.0 1.0
C29 A:9TH302 4.9 22.2 1.0
C31 A:9TH302 5.0 23.7 1.0

Reference:

T.Heinisch, M.Pellizzoni, M.Durrenberger, C.E.Tinberg, V.Kohler, J.Klehr, D.Haussinger, D.Baker, T.R.Ward. Improving the Catalytic Performance of An Artificial Metalloenzyme By Computational Design. J.Am.Chem.Soc. V. 137 10414 2015.
ISSN: ESSN 1520-5126
PubMed: 26226626
DOI: 10.1021/JACS.5B06622
Page generated: Sun Oct 27 13:33:41 2024

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