Zinc in PDB, part 129 (files: 5121-5160),
PDB 3dpe-3dzu
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 5121-5160 (PDB 3dpe-3dzu).
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3dpe (Zn: 2) - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
Other atoms:
Ca (2);
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3dpf (Zn: 4) - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
Other atoms:
Ca (4);
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3dpl (Zn: 3) - Structural Insights Into NEDD8 Activation of Cullin-Ring Ligases: Conformational Control of Conjugation.
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3dpy (Zn: 1) - Protein Farnesyltransferase Complexed with Fpp and Caged Tkcvim Substrate
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3dqr (Zn: 1) - Structure of Neuronal Nos D597N/M336V Mutant Heme Domain in Complex with A Inhibitor (+-)-N1-{Cis-4'-[(6"-Aminopyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}Ethane-1,2-Diamine
Other atoms:
Fe (2);
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3dqs (Zn: 1) - Structure of Endothelial Nos Heme Domain in Complex with A Inhibitor (+-)-N1-{Cis-4'-[(6"-Amino-4"-Methylpyridin-2"- Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)Ethane-1,2- Diamine
Other atoms:
As (2);
Fe (2);
Cl (2);
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3dqt (Zn: 1) - Structure of Endothelial Nos Heme Domain in Complex with A Inhibitor (+-)-N1-{Trans-4'-[(6"-Amino-4"-Methylpyridin-2"- Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)Ethane-1,2- Diamine
Other atoms:
As (2);
Fe (2);
Cl (2);
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3dqv (Zn: 6) - Structural Insights Into NEDD8 Activation of Cullin-Ring Ligases: Conformational Control of Conjugation
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3dra (Zn: 1) - Candida Albicans Protein Geranylgeranyltransferase-I Complexed with Ggpp
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3ds9 (Zn: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
Other atoms:
Ni (1);
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3dse (Zn: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
Other atoms:
Ni (1);
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3dsl (Zn: 2) - The Three-Dimensional Structure of Bothropasin, the Main Hemorrhagic Factor From Bothrops Jararaca Venom.
Other atoms:
Ca (6);
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3dss (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)
Other atoms:
Ca (2);
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3dst (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Geranylgeranyl Pyrophosphate
Other atoms:
Ca (1);
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3dsu (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Farnesyl Pyrophosphate
Other atoms:
Ca (1);
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3dsv (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg) Derivated From RAB7
Other atoms:
Ca (1);
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3dsw (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys Derivated From RAB7
Other atoms:
Ca (1);
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3dsx (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Di-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From RAB7
Other atoms:
Ca (1);
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3dti (Zn: 1) - Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae
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3dtk (Zn: 2) - Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae
Other atoms:
Cl (1);
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3dug (Zn: 32) - Crystal Structure of Zn-Dependent Arginine Carboxypeptidase Complexed with Zinc
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3dv7 (Zn: 1) - Role of Hydrophilic Residues in Proton Transfer During Catalysis By Human Carbonic Anhydrase II (N62A)
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3dvb (Zn: 1) - X-Ray Crystal Structure of Mutant N62V Human Carbonic Anhydrase II
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3dvc (Zn: 1) - X-Ray Crystal Structure of Mutant N62T of Human Carbonic Anhydrase II
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3dvd (Zn: 1) - X-Ray Crystal Structure of Mutant N62D of Human Carbonic Anhydrase II
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3dwb (Zn: 1) - Structure of Human Ece-1 Complexed with Phosphoramidon
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3dwd (Zn: 2) - Crystal Structure of the Arfgap Domain of Human ARFGAP1
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3dx0 (Zn: 1) - Golgi Alpha-Mannosidase II in Complex with Mannostatin A at pH 5.75
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3dx1 (Zn: 1) - Golgi Alpha-Mannosidase II in Complex with Mannostatin Analog (1S,2S,3R,4R)-4-Aminocyclopentane-1,2,3-Triol
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3dx2 (Zn: 1) - Golgi Mannosidase II Complex with Mannostatin B
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3dx3 (Zn: 1) - Golgi Alpha-Mannosidase II in Complex with Mannostatin Analog (1R,2R,3S,4R,5R)-5-Aminocyclopentane-1,2,3,4-Tetraol
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3dx4 (Zn: 1) - Golgi Alpha-Mannosidase II in Complex with Mannostatin Analog (1R,2R,3R,4S,5R)-4-Amino-5-Methoxycyclopentane-1,2, 3-Triol
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3dxj (Zn: 4) - Crystal Structure of Thermus Thermophilus Rna Polymerase Holoenzyme in Complex with the Antibiotic Myxopyronin
Other atoms:
Mg (3);
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3dxs (Zn: 1) - Crystal Structure of A Copper Binding Domain From HMA7, A P- Type Atpase
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3dxt (Zn: 1) - Crystal Structure of the Catalytic Core Domain of JMJD2D
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3dxu (Zn: 1) - The Crystal Structure of Core JMJD2D Complexed with Fe and N-Oxalylglycine
Other atoms:
Fe (1);
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3dyc (Zn: 6) - Structure of E322Y Alkaline Phosphatase in Complex with Inorganic Phosphate
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3dyn (Zn: 2) - Human Phosphodiestrase 9 in Complex with Cgmp (Zn Inhibited)
Other atoms:
Mg (2);
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3dza (Zn: 10) - Crystal Structure of Putative Membrane Protein of Unknown Function (YP_001337144.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.65 A Resolution
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3dzu (Zn: 4) - Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex on Dna Bound with Bvt.13, 9-Cis Retinoic Acid and NCOA2 Peptide
Other atoms:
Cl (2);
Page generated: Mon Dec 15 11:29:06 2025
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