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Zinc in PDB, part 124 (files: 4921-4960), PDB 3bvw-3ce2

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 4921-4960 (PDB 3bvw-3ce2).
  1. 3bvw (Zn: 1) - Golgi Mannosidase II D204A Catalytic Nucleophile Mutant Complex with Methyl (2-Deoxy-2-Acetamido-Beta-D- Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)- [Alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D- Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
  2. 3bvx (Zn: 1) - Golgi Mannosidase II D204A Catalytic Nucleophile Mutant Complex with Methyl (2-Deoxy-2-Acetamido-Beta-D- Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)- [(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
  3. 3bvz (Zn: 1) - Manipulating the Coupled Folding and Binding Process Drives Affinity Maturation in A Protein-Protein Complex
  4. 3bwi (Zn: 1) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Serotype A with An Acetate Ion Bound at the Active Site
  5. 3bxm (Zn: 2) - Structure of An Inactive Mutant of Human Glutamate Carboxypeptidase II [Gcpii(E424A)] in Complex with N- Acetyl-Asp-Glu (Naag)
    Other atoms: Cl (1); Ca (1);
  6. 3bxq (Zn: 2) - The Structure of A Mutant Insulin Uncouples Receptor Binding From Protein Allostery. An Electrostatic Block to the Tr Transition
  7. 3byr (Zn: 4) - Mode of Action of A Putative Zinc Transporter Czrb (Zn Form)
  8. 3byw (Zn: 19) - Crystal Structure of An Extracellular Domain of Arabinofuranosyltransferase From Corynebacterium Diphtheriae
  9. 3c04 (Zn: 1) - Structure of the P368G Mutant of Pmm/Pgm From P. Aeruginosa
  10. 3c0y (Zn: 6) - Crystal Structure of Catalytic Domain of Human Histone Deacetylase HDAC7
    Other atoms: K (6);
  11. 3c0z (Zn: 6) - Crystal Structure of Catalytic Domain of Human Histone Deacetylase HDAC7 in Complex with Saha
    Other atoms: K (6);
  12. 3c10 (Zn: 6) - Crystal Structure of Catalytic Domain of Human Histone Deacetylase HDAC7 in Complex with Trichostatin A (Tsa)
    Other atoms: K (6);
  13. 3c2s (Zn: 4) - Structural Characterization of A Human Fc Fragment Engineered For Lack of Effector Functions
  14. 3c2y (Zn: 1) - Trna-Guanine Transglycosylase (Tgt) in Complex with 6-Amino- 2-Methyl-1,7-Dihydro-Imidazo[4,5-G]Quinazolin-8-One
  15. 3c37 (Zn: 2) - X-Ray Structure of the Putative Zn-Dependent Peptidase Q74D82 at the Resolution 1.7 A. Northeast Structural Genomics Consortium Target GSR143A
  16. 3c3u (Zn: 1) - Crystal Structure of AKR1C1 in Complex with Nadp and 3,5- Dichlorosalicylic Acid
    Other atoms: Cl (2);
  17. 3c4u (Zn: 2) - Structure of Class II Fructose-Biphosphate Aldolase From Helicobacter Pylori
    Other atoms: Na (2);
  18. 3c52 (Zn: 2) - Class II Fructose-1,6-Bisphosphate Aldolase From Helicobacter Pylori in Complex with Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
    Other atoms: Ca (2); Na (2);
  19. 3c56 (Zn: 2) - Class II Fructose-1,6-Bisphosphate Aldolase From Helicobacter Pylori in Complex with N-(3-Hydroxypropyl)- Glycolohydroxamic Acid Bisphosphate, A Competitive Inhibitor
  20. 3c58 (Zn: 1) - Crystal Structure of A Complex Between the Wild-Type Lactococcus Lactis Fpg (Mutm) and A N7-Benzyl-Fapy-Dg Containing Dna
  21. 3c5k (Zn: 3) - Crystal Structure of Human HDAC6 Zinc Finger Domain
  22. 3c62 (Zn: 4) - Tetrameric Cytochrome CB562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination
    Other atoms: Fe (4); Ca (5);
  23. 3c63 (Zn: 4) - Tetrameric Cytochrome CB562 (K34/H59/D62/H63/H73/A74/H77) Assembly Stabilized By Interprotein Zinc Coordination
    Other atoms: Fe (4); Ca (5);
  24. 3c6w (Zn: 4) - Crystal Structure of the ING5 Phd Finger in Complex with H3K4ME3 Peptide
  25. 3c72 (Zn: 1) - Engineered Rabggtase in Complex with A Peptidomimetic Inhibitor
    Other atoms: Ca (1);
  26. 3c7p (Zn: 1) - Crystal Structure of Human Carbonic Anhydrase II in Complex with STX237
    Other atoms: Hg (1); Cl (1);
  27. 3c88 (Zn: 1) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Serotype A with Inhibitory Peptide Rrgc
    Other atoms: Na (1);
  28. 3c89 (Zn: 1) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Serotype A with Inhibitory Peptide Rrgm
  29. 3c8a (Zn: 1) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Serotype A with Inhibitory Peptide Rrgl
  30. 3c8b (Zn: 1) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Serotype A with Inhibitory Peptide Rrgi
  31. 3c8z (Zn: 2) - The 1.6 A Crystal Structure of Mshc: the Rate Limiting Enzyme in the Mycothiol Biosynthetic Pathway
  32. 3c9f (Zn: 2) - Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314
    Other atoms: Na (4);
  33. 3c9l (Zn: 1) - Structure of Ground-State Bovine Rhodospin in A Hexagonal Crystal Form
  34. 3ca2 (Zn: 1) - Crystallographic Studies of Inhibitor Binding Sites in Human Carbonic Anhydrase II. A Pentacoordinated Binding of the Scn-Ion to the Zinc at High P*H
    Other atoms: Hg (3);
  35. 3caj (Zn: 1) - Crystal Structure of the Human Carbonic Anhydrase II in Complex with Ethoxzolamide
    Other atoms: Hg (1); Cl (1);
  36. 3cao (Zn: 4) - Oxidised Structure of the Acidic Cytochrome C3 From Desulfovibrio Africanus
    Other atoms: As (3); Fe (4);
  37. 3car (Zn: 4) - Reduced Structure of the Acidic Cytochrome C3 From Desulfovibrio Africanus
    Other atoms: As (3); Fe (4);
  38. 3cbb (Zn: 4) - Crystal Structure of Hepatocyte Nuclear Factor 4ALPHA in Complex with Dna: Diabetes Gene Product
  39. 3ce1 (Zn: 1) - Crystal Structure of the Cu/Zn Superoxide Dismutase From Cryptococcus Liquefaciens Strain N6
    Other atoms: Cu (1);
  40. 3ce2 (Zn: 6) - Crystal Structure of Putative Peptidase From Chlamydophila Abortus
Page generated: Mon Dec 15 11:28:54 2025

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