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Zinc in PDB 3h1y: Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn)

Enzymatic activity of Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn)

All present enzymatic activity of Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn):
5.3.1.8;

Protein crystallography data

The structure of Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn), PDB code: 3h1y was solved by S.R.Sagurthi, G.Giri, H.S.Savithri, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.94 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.890, 92.250, 111.530, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn) (pdb code 3h1y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn), PDB code: 3h1y:

Zinc binding site 1 out of 1 in 3h1y

Go back to Zinc Binding Sites List in 3h1y
Zinc binding site 1 out of 1 in the Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Substrate (F6P)and Metal Atom (Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn399

b:18.7
occ:0.60
 OE1 A:GLU134 2.0 29.2 1.0
NE2 A:HIS255 2.0 12.5 1.0
NE2 A:HIS99 2.1 19.3 1.0
CE1 A:HIS255 2.9 14.9 1.0
CE1 A:HIS99 2.9 17.8 1.0
CD A:GLU134 3.1 27.2 1.0
CD2 A:HIS255 3.1 11.7 1.0
CD2 A:HIS99 3.1 18.1 1.0
OE2 A:GLU134 3.5 28.6 1.0
O A:HOH614 3.9 33.2 1.0
O1 A:EDO395 4.0 23.8 1.0
ND1 A:HIS255 4.0 12.4 1.0
ND1 A:HIS99 4.1 15.9 1.0
OE1 A:GLN97 4.1 15.5 1.0
CG A:HIS255 4.2 11.8 1.0
CG A:HIS99 4.2 17.1 1.0
CG A:GLU134 4.3 22.0 1.0
CD1 A:LEU249 4.4 25.1 1.0
C1 A:EDO395 4.4 19.0 1.0
OH A:TYR257 4.6 17.3 1.0
CB A:LEU249 4.7 20.7 1.0
C6 A:F6P392 4.8 26.8 0.5
CB A:GLN97 4.8 11.9 1.0
CB A:GLU134 4.9 20.1 1.0
CG A:LEU249 4.9 22.5 1.0
OE2 A:GLU264 5.0 22.8 1.0
C5 A:F6P392 5.0 27.3 0.5

Reference:

S.R.Sagurthi, G.Giri, H.S.Savithri, M.R.N.Murthy. Crystal Structure of Mannose 6-Phosphate Isomerase From Salmonella Typhimurium Bound to Metal Atoms and Substrate: Implications For Catalytic Mechanism To Be Published.
Page generated: Thu Oct 24 14:11:31 2024

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