Zinc in PDB 2yhg: Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism

The structure of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism, PDB code: 2yhg was solved by J.H.Hehemann, C.Marsters, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.73 / 1.08
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.580, 61.580, 125.460, 90.00, 90.00, 90.00
R / Rfree (%)	13.3 / 15.1

The structure of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Calcium	(Ca)	2 atoms
Magnesium	(Mg)	3 atoms

The binding sites of Zinc atom in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism (pdb code 2yhg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism, PDB code: 2yhg:

Zinc binding site 1 out of 1 in the Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1941 b:10.8 occ:0.60 OD1 A:ASP816 2.1 14.8 1.0 O A:HOH2210 2.1 16.4 1.0 O A:HOH2209 2.1 11.5 1.0 O2 A:EDO1944 2.1 14.5 0.5 NE2 A:HIS723 2.1 13.6 1.0 O A:HOH2328 2.1 15.3 1.0 C2 A:EDO1944 3.0 17.2 0.5 CE1 A:HIS723 3.0 14.2 1.0 CG A:ASP816 3.1 12.3 1.0 CD2 A:HIS723 3.1 12.3 1.0 OD2 A:ASP816 3.4 13.7 1.0 C1 A:EDO1944 3.5 18.8 0.5 ND1 A:HIS723 4.1 12.9 1.0 O A:GLN812 4.2 10.1 1.0 O A:HIS719 4.2 10.4 1.0 ND1 A:HIS719 4.2 13.3 1.0 CG A:HIS723 4.2 11.7 1.0 CG A:GLN812 4.4 10.4 1.0 CB A:ASP816 4.4 12.0 1.0 O1 A:EDO1944 4.5 18.7 0.5 CA A:HIS719 4.6 10.2 1.0 N A:ASP816 4.7 10.2 1.0 CA A:ASP816 4.8 10.6 1.0 NE2 A:GLN812 4.8 13.1 1.0 C A:HIS719 4.8 9.8 1.0 CB A:HIS719 4.9 10.9 1.0

J.H.Hehemann, C.Marsters, A.B.Boraston. Ab Initio Phasing of A Nucleoside Hydrolase-Related Hypothetical Protein From Saccharophagus Degradans That Is Associated with Carbohydrate Metabolism. Proteins V. 79 2992 2011.
ISSN: ESSN 1097-0134
PubMed: 21905122
DOI: 10.1002/PROT.23126