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Zinc in PDB 2ybb: Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876)

Enzymatic activity of Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876)

All present enzymatic activity of Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876):
1.10.2.2; 1.6.5.3; 1.6.99.5; 1.9.3.1;

Other elements in 2ybb:

The structure of Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876) also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Copper (Cu) 3 atoms
Calcium (Ca) 1 atom
Iron (Fe) 45 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876) (pdb code 2ybb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876), PDB code: 2ybb:

Zinc binding site 1 out of 1 in 2ybb

Go back to Zinc Binding Sites List in 2ybb
Zinc binding site 1 out of 1 in the Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Fitted Model For Bovine Mitochondrial Supercomplex I1III2IV1 By Single Particle Cryo-Em (Emd-1876) within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn99

b:19.2
occ:1.00
 SG Q:CYS60 2.4 16.4 1.0
SG Q:CYS85 2.5 21.5 1.0
SG Q:CYS82 2.5 17.6 1.0
SG Q:CYS62 2.5 23.4 1.0
CB Q:CYS82 3.0 18.1 1.0
CB Q:CYS60 3.1 17.9 1.0
CB Q:CYS62 3.7 19.6 1.0
OG Q:SER84 3.7 50.5 1.0
CA Q:CYS62 3.8 19.5 1.0
CB Q:CYS85 3.9 11.6 1.0
N Q:CYS62 4.0 16.2 1.0
N Q:CYS85 4.2 26.3 1.0
O Q:CYS60 4.2 24.4 1.0
C Q:CYS60 4.3 17.1 1.0
CA Q:CYS60 4.3 14.0 1.0
OG1 Q:THR87 4.5 19.6 1.0
CA Q:CYS82 4.5 13.5 1.0
CA Q:CYS85 4.5 23.6 1.0
CB Q:THR87 4.8 15.2 1.0
C Q:ILE61 4.9 19.0 1.0
C Q:SER84 4.9 27.1 1.0
C Q:CYS82 5.0 13.3 1.0

Reference:

T.Althoff, D.J.Mills, J.-L.Popot, W.Kuehlbrandt. Arrangement of Electron Transport Chain Components in Bovine Mitochondrial Supercomplex I(1)III(2)IV(1). Embo J. V. 30 4652 2011.
ISSN: ISSN 0261-4189
PubMed: 21909073
DOI: 10.1038/EMBOJ.2011.324
Page generated: Wed Aug 20 07:04:24 2025

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