Zinc in PDB 2xoy: C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate

The structure of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate, PDB code: 2xoy was solved by J.Oberoi, R.Bayliss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.256 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	163.050, 52.120, 83.610, 90.00, 105.34, 90.00
R / Rfree (%)	19.47 / 24.6

The binding sites of Zinc atom in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate (pdb code 2xoy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate, PDB code: 2xoy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn991 b:70.8 occ:1.00 NE2 A:HIS482 2.1 64.2 1.0 SG A:CYS428 2.3 61.2 1.0 SG A:CYS476 2.4 76.1 1.0 SG A:CYS431 2.4 75.3 1.0 CD2 A:HIS482 2.9 64.1 1.0 CE1 A:HIS482 3.2 67.0 1.0 CB A:CYS428 3.3 61.8 1.0 N A:CYS431 3.4 77.1 1.0 CB A:CYS476 3.4 85.4 1.0 CB A:CYS431 3.4 71.2 1.0 CA A:CYS431 3.5 78.1 1.0 N A:CYS428 3.9 66.6 1.0 C A:GLN430 3.9 74.2 1.0 CA A:CYS428 4.0 65.0 1.0 CG A:HIS482 4.2 67.4 1.0 ND1 A:HIS482 4.2 70.3 1.0 O A:GLN430 4.3 75.0 1.0 C A:CYS428 4.4 65.7 1.0 O A:CYS428 4.5 66.0 1.0 N A:GLN430 4.5 68.1 1.0 CA A:GLN430 4.6 68.3 1.0 CA A:CYS476 4.7 87.2 1.0 CB A:GLN430 4.8 69.5 1.0 CD A:PRO493 4.8 59.9 1.0 N A:CYS476 4.8 82.3 1.0

Zinc binding site 2 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn992 b:45.5 occ:1.00 SG A:CYS518 2.2 45.1 1.0 SG A:CYS485 2.3 46.7 1.0 SG A:CYS488 2.4 43.5 1.0 SG A:CYS524 2.6 43.4 1.0 CB A:CYS485 3.0 43.7 1.0 CB A:CYS488 3.1 49.9 1.0 CB A:CYS524 3.2 40.1 1.0 CB A:CYS518 3.3 46.3 1.0 N A:CYS488 3.8 45.9 1.0 N A:CYS518 3.9 45.4 1.0 CA A:CYS524 3.9 40.7 1.0 ZN A:ZN993 4.0 37.9 1.0 CA A:CYS488 4.1 49.0 1.0 CA A:CYS518 4.1 48.4 1.0 SG A:CYS532 4.4 45.7 1.0 CA A:CYS485 4.5 46.4 1.0 N A:HIS519 4.6 41.9 1.0 C A:CYS518 4.6 44.9 1.0 CB A:CYS487 4.8 43.1 1.0 C A:CYS488 4.9 52.1 1.0 N A:THR525 4.9 53.3 1.0 N A:CYS524 4.9 45.3 1.0 C A:CYS487 4.9 48.1 1.0 C A:CYS524 5.0 46.6 1.0 SG A:CYS487 5.0 41.6 1.0

Zinc binding site 3 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn993 b:37.9 occ:1.00 SG A:CYS532 2.2 45.7 1.0 SG A:CYS487 2.3 41.6 1.0 SG A:CYS524 2.4 43.4 1.0 SG A:CYS529 2.4 41.7 1.0 CB A:CYS487 3.1 43.1 1.0 CB A:CYS532 3.1 41.1 1.0 CB A:CYS524 3.2 40.1 1.0 CB A:CYS529 3.5 43.0 1.0 ZN A:ZN992 4.0 45.5 1.0 N A:CYS532 4.1 41.6 1.0 CA A:CYS532 4.2 39.7 1.0 N A:CYS488 4.4 45.9 1.0 CA A:CYS487 4.4 45.7 1.0 SG A:CYS485 4.5 46.7 1.0 C A:CYS487 4.6 48.1 1.0 CA A:CYS524 4.6 40.7 1.0 CA A:CYS529 4.6 44.7 1.0 CB A:CYS488 4.6 49.9 1.0 C A:CYS524 4.9 46.6 1.0

Zinc binding site 4 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn994 b:43.5 occ:1.00 SG A:CYS604 2.2 37.0 1.0 SG A:CYS601 2.3 37.9 1.0 SG A:CYS513 2.4 44.4 1.0 SG A:CYS510 2.5 40.6 1.0 CB A:CYS510 3.1 38.1 1.0 CB A:CYS604 3.2 35.1 1.0 CB A:CYS513 3.2 38.3 1.0 CB A:CYS601 3.5 37.5 1.0 N A:CYS513 3.7 43.9 1.0 N A:CYS601 4.0 34.0 1.0 CA A:CYS513 4.1 44.0 1.0 N A:CYS604 4.2 33.7 1.0 CA A:CYS604 4.3 33.3 1.0 CA A:CYS601 4.3 36.0 1.0 CA A:CYS510 4.6 40.6 1.0 CB A:VAL512 4.6 45.1 1.0 C A:VAL512 4.8 42.2 1.0 CE2 A:PHE517 4.8 41.8 1.0 C A:CYS601 4.9 35.7 1.0 O A:CYS601 5.0 34.4 1.0 N A:VAL512 5.0 43.8 1.0

Zinc binding site 5 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn995 b:29.8 occ:1.00 NE2 A:HIS649 2.0 29.4 1.0 NE2 A:HIS655 2.2 34.2 1.0 SG A:CYS641 2.3 30.3 1.0 SG A:CYS635 2.4 29.5 1.0 CD2 A:HIS649 3.0 33.5 1.0 CD2 A:HIS655 3.0 29.4 1.0 CE1 A:HIS649 3.0 30.9 1.0 CB A:CYS641 3.1 27.6 1.0 CE1 A:HIS655 3.2 34.8 1.0 CB A:CYS635 3.3 30.6 1.0 ND1 A:HIS649 4.1 34.1 1.0 CG A:HIS649 4.2 32.5 1.0 CG A:HIS655 4.2 32.6 1.0 ND1 A:HIS655 4.3 35.5 1.0 CB A:GLN644 4.5 31.5 1.0 N A:GLN644 4.5 35.3 1.0 CD1 A:TRP637 4.6 28.7 1.0 CA A:CYS641 4.6 28.5 1.0 CB A:THR643 4.6 32.2 1.0 CA A:CYS635 4.7 32.6 1.0 CA A:GLN644 4.8 35.2 1.0 CB A:TRP637 5.0 27.4 1.0 C A:THR643 5.0 33.6 1.0 O A:GLY638 5.0 31.3 1.0

Zinc binding site 6 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn991 b:40.1 occ:1.00 NE2 B:HIS482 2.0 37.6 1.0 SG B:CYS476 2.4 43.8 1.0 SG B:CYS428 2.4 41.4 1.0 SG B:CYS431 2.5 39.9 1.0 CD2 B:HIS482 2.9 41.1 1.0 CE1 B:HIS482 3.1 38.9 1.0 N B:CYS431 3.4 37.4 1.0 CB B:CYS428 3.4 34.1 1.0 CB B:CYS476 3.5 42.1 1.0 CB B:CYS431 3.6 40.2 1.0 CA B:CYS431 3.7 38.3 1.0 N B:CYS428 3.8 37.4 1.0 C B:GLN430 4.0 41.7 1.0 CA B:CYS428 4.1 36.7 1.0 CG B:HIS482 4.1 41.1 1.0 ND1 B:HIS482 4.2 38.4 1.0 C B:CYS428 4.4 42.3 1.0 O B:CYS428 4.5 40.7 1.0 O B:GLN430 4.5 40.3 1.0 N B:GLN430 4.5 43.5 1.0 O B:HOH2003 4.6 42.0 1.0 CA B:GLN430 4.7 47.5 1.0 CG B:PRO493 4.7 38.7 1.0 CD B:PRO493 4.8 40.3 1.0 CA B:CYS476 4.8 40.7 1.0 N B:PRO493 4.9 36.3 1.0 CB B:GLN430 4.9 41.4 1.0 C B:VAL427 4.9 44.3 1.0

Zinc binding site 7 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn992 b:43.9 occ:1.00 SG B:CYS485 2.2 38.1 1.0 SG B:CYS488 2.3 35.2 1.0 SG B:CYS524 2.5 43.2 1.0 SG B:CYS518 2.6 47.8 1.0 CB B:CYS485 3.0 37.9 1.0 CB B:CYS524 3.2 43.3 1.0 CB B:CYS518 3.2 38.6 1.0 CB B:CYS488 3.4 44.1 1.0 N B:CYS488 3.8 41.9 1.0 N B:CYS518 3.9 45.2 1.0 CA B:CYS524 4.0 42.4 1.0 CA B:CYS518 4.0 44.4 1.0 ZN B:ZN993 4.1 41.2 1.0 CA B:CYS488 4.2 43.5 1.0 SG B:CYS532 4.3 39.5 1.0 CA B:CYS485 4.5 36.9 1.0 N B:HIS519 4.5 41.3 1.0 C B:CYS518 4.5 46.8 1.0 CB B:CYS487 4.5 38.7 1.0 N B:THR525 4.8 51.8 1.0 C B:CYS487 4.9 47.6 1.0 SG B:CYS487 4.9 40.9 1.0 C B:CYS524 5.0 49.9 1.0 N B:CYS524 5.0 46.4 1.0

Zinc binding site 8 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn993 b:41.2 occ:1.00 SG B:CYS532 2.2 39.5 1.0 SG B:CYS487 2.2 40.9 1.0 SG B:CYS529 2.4 49.9 1.0 SG B:CYS524 2.5 43.2 1.0 CB B:CYS487 3.0 38.7 1.0 CB B:CYS532 3.0 43.8 1.0 CB B:CYS529 3.2 54.0 1.0 CB B:CYS524 3.3 43.3 1.0 N B:CYS532 3.9 40.0 1.0 ZN B:ZN992 4.1 43.9 1.0 CA B:CYS532 4.1 36.9 1.0 CA B:CYS487 4.4 39.7 1.0 CA B:CYS529 4.5 54.1 1.0 N B:CYS488 4.5 41.9 1.0 SG B:CYS485 4.5 38.1 1.0 CA B:CYS524 4.7 42.4 1.0 C B:CYS487 4.7 47.6 1.0 CB B:HIS519 4.9 45.3 1.0 N B:THR525 4.9 51.8 1.0 C B:CYS524 5.0 49.9 1.0

Zinc binding site 9 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn994 b:38.5 occ:1.00 SG B:CYS601 2.2 37.4 1.0 SG B:CYS513 2.3 41.0 1.0 SG B:CYS510 2.3 35.8 1.0 SG B:CYS604 2.4 36.7 1.0 CB B:CYS510 3.1 37.9 1.0 CB B:CYS604 3.2 33.8 1.0 CB B:CYS513 3.3 34.8 1.0 CB B:CYS601 3.4 33.4 1.0 N B:CYS513 3.7 36.3 1.0 N B:CYS601 4.0 32.8 1.0 CA B:CYS513 4.1 37.5 1.0 CA B:CYS601 4.3 34.5 1.0 CA B:CYS604 4.4 35.0 1.0 N B:CYS604 4.4 35.1 1.0 CA B:CYS510 4.5 34.3 1.0 CB B:VAL512 4.6 38.0 1.0 C B:VAL512 4.7 37.4 1.0 O B:HOH2008 4.8 41.6 1.0 C B:CYS513 4.9 40.5 1.0 N B:LEU514 4.9 37.4 1.0 C B:CYS601 5.0 38.6 1.0 N B:VAL512 5.0 35.4 1.0 CE1 B:PHE517 5.0 40.7 1.0 C B:CYS510 5.0 37.1 1.0 CA B:VAL512 5.0 35.7 1.0

Zinc binding site 10 out of 10 in the C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of C-Terminal Cysteine-Rich Domain of Human Chfr Bound to P(1), P(2)-Diadenosine-5'-Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn995 b:33.8 occ:1.00 NE2 B:HIS649 2.1 44.2 1.0 NE2 B:HIS655 2.1 37.7 1.0 SG B:CYS635 2.3 39.0 1.0 SG B:CYS641 2.3 39.9 1.0 CE1 B:HIS649 2.9 44.0 1.0 CE1 B:HIS655 3.1 38.5 1.0 CB B:CYS641 3.1 43.8 1.0 CD2 B:HIS649 3.2 45.0 1.0 CD2 B:HIS655 3.2 37.6 1.0 CB B:CYS635 3.4 40.2 1.0 ND1 B:HIS649 4.1 46.4 1.0 CG2 B:THR643 4.2 43.7 1.0 CD1 B:TRP637 4.2 56.9 1.0 ND1 B:HIS655 4.2 40.6 1.0 CG B:HIS649 4.2 39.9 1.0 CG B:HIS655 4.3 35.9 1.0 CA B:CYS641 4.5 41.7 1.0 CB B:TRP637 4.7 49.4 1.0 N B:GLN644 4.7 46.2 1.0 CB B:GLN644 4.8 39.1 1.0 CA B:CYS635 4.8 37.8 1.0 CG B:TRP637 4.8 55.1 1.0

J.Oberoi, M.W.Richards, S.Crumpler, N.Brown, J.Blagg, R.Bayliss. Structural Basis of Poly(Adp-Ribose) Recognition By the Multizinc Binding Domain of Checkpoint with Forkhead-Associated and Ring Domains (Chfr). J.Biol.Chem. V. 285 39348 2010.
ISSN: ISSN 0021-9258
PubMed: 20880844
DOI: 10.1074/JBC.M110.159855