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Zinc in PDB 3pz1: Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3

Enzymatic activity of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3

All present enzymatic activity of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3:
2.5.1.60;

Protein crystallography data

The structure of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3, PDB code: 3pz1 was solved by Z.Guo, R.S.Bon, E.A.Stigter, H.Waldmann, K.Alexandrov, W.Blankenfeldt, R.S.Goody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.40 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.554, 90.583, 114.610, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.2

Other elements in 3pz1:

The structure of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3 (pdb code 3pz1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3, PDB code: 3pz1:

Zinc binding site 1 out of 1 in 3pz1

Go back to Zinc Binding Sites List in 3pz1
Zinc binding site 1 out of 1 in the Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Rabggtase(Delta Lrr; Delta Ig) in Complex with BMS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn332

b:26.1
occ:1.00
 OD2 B:ASP238 2.0 22.7 1.0
N3 B:3PZ1 2.1 25.9 1.0
NE2 B:HIS290 2.2 23.8 1.0
SG B:CYS240 2.3 25.8 1.0
CG B:ASP238 2.6 25.0 1.0
OD1 B:ASP238 2.6 24.7 1.0
C13 B:3PZ1 3.0 29.5 1.0
CD2 B:HIS290 3.0 25.8 1.0
C12 B:3PZ1 3.1 26.3 1.0
CE1 B:HIS290 3.3 25.7 1.0
CB B:CYS240 3.3 24.4 1.0
CB B:ASP238 4.0 25.9 1.0
CE1 B:PHE289 4.1 23.4 1.0
N4 B:3PZ1 4.1 30.6 1.0
C11 B:3PZ1 4.2 28.5 1.0
CG B:HIS290 4.2 25.9 1.0
C2 B:DMS335 4.3 41.5 1.0
N B:CYS240 4.3 24.5 1.0
ND1 B:HIS290 4.3 26.2 1.0
CB B:ASP280 4.3 32.1 1.0
O B:HOH440 4.3 42.7 1.0
CA B:CYS240 4.4 24.2 1.0
CD1 B:PHE289 4.7 23.5 1.0
CA B:ASP280 5.0 32.3 1.0

Reference:

R.S.Bon, Z.Guo, E.A.Stigter, S.Wetzel, S.Menninger, A.Wolf, A.Choidas, K.Alexandrov, W.Blankenfeldt, R.S.Goody, H.Waldmann. Structure-Guided Development of Selective Rabggtase Inhibitors. Angew.Chem.Int.Ed.Engl. V. 50 4957 2011.
ISSN: ISSN 1433-7851
PubMed: 21520375
DOI: 10.1002/ANIE.201101210
Page generated: Sat Oct 26 11:48:43 2024

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