Atomistry » Zinc » PDB 2gzi-2han » 2h6l
Atomistry »
  Zinc »
    PDB 2gzi-2han »
      2h6l »

Zinc in PDB 2h6l: X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103.

Protein crystallography data

The structure of X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103., PDB code: 2h6l was solved by A.P.Kuzin, M.Abashidze, Y.Fang, C.Chen, K.Cunningham, K.Conover, L.C.Ma, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.44 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.673, 47.714, 47.665, 70.75, 70.81, 70.83
R / Rfree (%) 18.7 / 23.7

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103. (pdb code 2h6l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103., PDB code: 2h6l:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2h6l

Go back to Zinc Binding Sites List in 2h6l
Zinc binding site 1 out of 3 in the X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:26.5
occ:1.00
ND1 A:HIS104 2.1 17.1 1.0
NE2 A:HIS91 2.2 17.6 1.0
NE2 A:HIS89 2.2 18.2 1.0
O A:ACY301 2.3 34.3 1.0
CH3 A:ACY301 2.8 35.8 1.0
C A:ACY301 2.8 36.4 1.0
CE1 A:HIS104 2.9 17.4 1.0
CD2 A:HIS91 3.0 17.0 1.0
CD2 A:HIS89 3.1 16.8 1.0
CE1 A:HIS89 3.2 17.5 1.0
CG A:HIS104 3.3 17.1 1.0
CE1 A:HIS91 3.3 18.9 1.0
OH A:TYR61 3.6 30.5 1.0
CB A:HIS104 3.7 17.3 1.0
OXT A:ACY301 4.1 38.0 1.0
NE2 A:HIS104 4.1 19.4 1.0
CG A:HIS91 4.2 19.1 1.0
CG A:HIS89 4.3 17.9 1.0
ND1 A:HIS89 4.3 17.9 1.0
CD2 A:HIS104 4.3 14.8 1.0
ND1 A:HIS91 4.3 22.2 1.0
CA A:HIS104 4.4 17.8 1.0
OE1 C:GLU71 4.4 24.6 1.0
CZ A:TYR61 4.6 27.0 1.0
CE1 A:TYR61 4.7 26.2 1.0
O A:HOH466 4.9 44.9 1.0

Zinc binding site 2 out of 3 in 2h6l

Go back to Zinc Binding Sites List in 2h6l
Zinc binding site 2 out of 3 in the X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:25.9
occ:1.00
NE2 B:HIS91 2.2 13.6 1.0
O B:ACY302 2.2 30.4 1.0
ND1 B:HIS104 2.2 18.0 1.0
NE2 B:HIS89 2.3 18.0 1.0
CH3 B:ACY302 2.6 30.4 1.0
C B:ACY302 2.7 33.0 1.0
CE1 B:HIS104 3.0 17.4 1.0
CD2 B:HIS91 3.0 14.7 1.0
CD2 B:HIS89 3.1 16.8 1.0
CE1 B:HIS91 3.2 16.4 1.0
CG B:HIS104 3.3 16.4 1.0
CE1 B:HIS89 3.3 17.3 1.0
CB B:HIS104 3.7 16.7 1.0
OH B:TYR61 3.8 29.0 1.0
OXT B:ACY302 4.1 33.8 1.0
NE2 B:HIS104 4.2 19.7 1.0
CG B:HIS91 4.2 16.8 1.0
ND1 B:HIS91 4.3 17.4 1.0
CA B:HIS104 4.3 17.0 1.0
CG B:HIS89 4.3 18.0 1.0
CD2 B:HIS104 4.4 16.7 1.0
ND1 B:HIS89 4.4 18.0 1.0
OE1 A:GLU71 4.5 24.6 1.0
CE1 B:TYR61 4.6 25.2 1.0
CZ B:TYR61 4.6 26.2 1.0

Zinc binding site 3 out of 3 in 2h6l

Go back to Zinc Binding Sites List in 2h6l
Zinc binding site 3 out of 3 in the X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of X-Ray Crystal Structure of the Metal-Containing Protein AF0104 From Archaeoglobus Fulgidus. Northeast Structural Genomics Consortium Target GR103. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn403

b:25.9
occ:1.00
ND1 C:HIS104 2.1 18.0 1.0
NE2 C:HIS91 2.2 16.1 1.0
NE2 C:HIS89 2.3 18.0 1.0
O C:ACY303 2.4 25.9 1.0
CH3 C:ACY303 2.5 25.0 1.0
C C:ACY303 2.8 26.8 1.0
CE1 C:HIS104 3.0 17.5 1.0
CD2 C:HIS91 3.1 14.8 1.0
CD2 C:HIS89 3.2 17.2 1.0
CG C:HIS104 3.3 16.5 1.0
CE1 C:HIS91 3.3 15.8 1.0
CE1 C:HIS89 3.3 19.9 1.0
OH C:TYR61 3.7 29.9 1.0
CB C:HIS104 3.7 16.6 1.0
OXT C:ACY303 4.1 29.2 1.0
NE2 C:HIS104 4.1 20.1 1.0
CG C:HIS91 4.3 16.9 1.0
CD2 C:HIS104 4.3 17.9 1.0
ND1 C:HIS91 4.3 18.5 1.0
CG C:HIS89 4.3 18.0 1.0
CA C:HIS104 4.4 17.8 1.0
ND1 C:HIS89 4.4 18.8 1.0
OE1 B:GLU71 4.4 27.1 1.0
CZ C:TYR61 4.6 26.9 1.0
CE1 C:TYR61 4.7 26.9 1.0
O C:HOH438 4.7 31.0 1.0

Reference:

A.P.Kuzin, M.Abashidze, Y.Fang, C.Chen, K.Cunningham, K.Conover, L.C.Ma, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Three Dimensional Structure of the Hypothetical Protein AF0104 at the 2.0 A Resolution. To Be Published.
Page generated: Thu Oct 17 00:33:14 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy