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Zinc in PDB 2zsg: Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8

Enzymatic activity of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8

All present enzymatic activity of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8:
3.4.11.9;

Protein crystallography data

The structure of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8, PDB code: 2zsg was solved by H.Mizutani, N.Kunishima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.972, 77.923, 77.553, 90.00, 92.44, 90.00
R / Rfree (%) 19.1 / 21.5

Other elements in 2zsg:

The structure of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 (pdb code 2zsg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8, PDB code: 2zsg:

Zinc binding site 1 out of 1 in 2zsg

Go back to Zinc Binding Sites List in 2zsg
Zinc binding site 1 out of 1 in the Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:82.8
occ:1.00
 OE1 A:GLU322 2.7 18.4 1.0
OD2 A:ASP218 2.7 16.1 1.0
OE2 A:GLU336 3.3 14.2 1.0
OD2 A:ASP229 3.3 22.3 1.0
OD1 A:ASP229 3.3 19.3 1.0
OE2 A:GLU322 3.3 17.6 1.0
OE1 A:GLU336 3.4 13.2 1.0
CD A:GLU322 3.4 18.6 1.0
O A:HOH1332 3.4 48.1 1.0
CG A:ASP218 3.6 14.4 1.0
CG A:ASP229 3.6 17.9 1.0
CD A:GLU336 3.6 13.7 1.0
O A:HOH1246 3.7 40.1 1.0
OD1 A:ASP218 3.7 14.3 1.0
NE2 A:HIS293 3.7 18.7 1.0
OG1 A:THR231 4.3 11.8 1.0
NE A:ARG334 4.4 18.6 1.0
CD2 A:HIS293 4.6 15.5 1.0
CE1 A:HIS293 4.7 17.9 1.0
NH2 A:ARG334 4.8 20.9 1.0
CG A:GLU322 4.8 14.8 1.0
CZ A:ARG334 4.9 21.0 1.0
CG A:GLU336 5.0 13.1 1.0

Reference:

H.Mizutani, N.Kunishima. Crystal Structure of X-Pro Aminopeptidase From Thermotoga Maritima MSB8 To Be Published.
Page generated: Wed Aug 20 07:32:33 2025

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