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Zinc in PDB 2gag: Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution

Protein crystallography data

The structure of Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution, PDB code: 2gag was solved by Z.W.Chen, A.Hassan-Abdulah, G.Zhao, M.S.Jorns, F.S.Mathews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.186, 132.407, 197.418, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23

Zinc Binding Sites:

The binding sites of Zinc atom in the Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution (pdb code 2gag). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution, PDB code: 2gag:

Zinc binding site 1 out of 1 in 2gag

Go back to Zinc Binding Sites List in 2gag
Zinc binding site 1 out of 1 in the Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heteroteterameric Sarcosine: Structure of A Diflavin Metaloenzyme at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:21.4
occ:1.00
ND1 D:HIS59 2.1 16.3 1.0
SG D:CYS9 2.3 18.8 1.0
SG D:CYS63 2.4 22.6 1.0
SG D:CYS6 2.4 20.9 1.0
CE1 D:HIS59 3.1 19.2 1.0
CG D:HIS59 3.1 21.2 1.0
CB D:CYS9 3.2 17.2 1.0
CB D:CYS63 3.3 17.2 1.0
CB D:CYS6 3.4 17.3 1.0
CB D:HIS59 3.5 21.6 1.0
N D:CYS63 3.5 20.7 1.0
N D:CYS9 3.6 19.7 1.0
CA D:CYS63 4.0 23.4 1.0
CA D:CYS9 4.1 22.9 1.0
NE2 D:HIS59 4.2 20.7 1.0
CB D:ASN8 4.2 18.7 1.0
CD2 D:HIS59 4.3 19.1 1.0
C D:ASN8 4.5 21.9 1.0
C D:GLY62 4.6 21.9 1.0
OD1 D:ASN8 4.7 28.7 1.0
CA D:ASN8 4.7 17.1 1.0
O C:HOH1029 4.8 22.3 1.0
N D:ASN8 4.8 22.0 1.0
CA D:GLY62 4.8 19.0 1.0
CA D:CYS6 4.8 19.0 1.0
C D:CYS63 4.9 20.8 1.0
CG D:ASN8 4.9 27.5 1.0
CA D:HIS59 5.0 21.1 1.0

Reference:

Z.W.Chen, A.Hassan-Abdulah, G.Zhao, M.S.Jorns, F.S.Mathews. Heterotetrameric Sarcosine Oxidase: Structure of A Diflavin Metalloenzyme at 1.85 A Resolution. J.Mol.Biol. V. 360 1000 2006.
ISSN: ISSN 0022-2836
PubMed: 16820168
DOI: 10.1016/J.JMB.2006.05.067
Page generated: Wed Aug 20 02:59:20 2025

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