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Zinc in PDB 1zu1: Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa (pdb code 1zu1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa, PDB code: 1zu1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1zu1

Go back to Zinc Binding Sites List in 1zu1
Zinc binding site 1 out of 2 in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn129

b:1.0
occ:1.00
NE2 A:HIS52 2.1 1.0 1.0
ND1 A:HIS58 2.1 1.0 1.0
SG A:CYS39 2.3 1.0 1.0
SG A:CYS36 2.3 1.0 1.0
HB2 A:CYS39 2.6 1.0 1.0
CD2 A:HIS52 2.9 1.0 1.0
CE1 A:HIS58 2.9 1.0 1.0
CB A:CYS39 3.0 1.0 1.0
HD2 A:HIS52 3.0 1.0 1.0
HE1 A:HIS58 3.0 1.0 1.0
CE1 A:HIS52 3.2 1.0 1.0
CG A:HIS58 3.3 1.0 1.0
HB3 A:CYS36 3.4 1.0 1.0
CB A:CYS36 3.4 1.0 1.0
H A:CYS39 3.4 1.0 1.0
HB2 A:HIS58 3.5 1.0 1.0
HE1 A:HIS52 3.6 1.0 1.0
HB2 A:CYS36 3.6 1.0 1.0
HB3 A:CYS39 3.6 1.0 1.0
HA A:HIS58 3.8 1.0 1.0
CB A:HIS58 3.8 1.0 1.0
HB A:VAL38 3.9 1.0 1.0
N A:CYS39 4.0 1.0 1.0
CG A:HIS52 4.2 1.0 1.0
CA A:CYS39 4.2 1.0 1.0
NE2 A:HIS58 4.2 1.0 1.0
ND1 A:HIS52 4.3 1.0 1.0
CD2 A:HIS58 4.3 1.0 1.0
CA A:HIS58 4.4 1.0 1.0
HE1 A:TYR53 4.5 1.0 1.0
HG22 A:VAL62 4.5 1.0 1.0
HE1 A:PHE31 4.5 1.0 1.0
HG13 A:VAL38 4.6 1.0 1.0
HA A:CYS39 4.8 1.0 1.0
CA A:CYS36 4.8 1.0 1.0
HD1 A:TYR53 4.8 1.0 1.0
HB3 A:LYS61 4.8 1.0 1.0
HB3 A:HIS58 4.8 1.0 1.0
CB A:VAL38 4.9 1.0 1.0
CE1 A:TYR53 4.9 1.0 1.0
C A:VAL38 5.0 1.0 1.0

Zinc binding site 2 out of 2 in 1zu1

Go back to Zinc Binding Sites List in 1zu1
Zinc binding site 2 out of 2 in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn130

b:1.0
occ:1.00
NE2 A:HIS113 2.1 1.0 1.0
ND1 A:HIS119 2.1 1.0 1.0
SG A:CYS100 2.3 1.0 1.0
SG A:CYS97 2.3 1.0 1.0
CE1 A:HIS113 2.9 1.0 1.0
CE1 A:HIS119 3.0 1.0 1.0
HE1 A:HIS113 3.0 1.0 1.0
HA A:HIS119 3.1 1.0 1.0
HE1 A:HIS119 3.1 1.0 1.0
CG A:HIS119 3.2 1.0 1.0
CD2 A:HIS113 3.2 1.0 1.0
HB2 A:CYS100 3.4 1.0 1.0
HB A:VAL99 3.4 1.0 1.0
CB A:CYS97 3.5 1.0 1.0
HB3 A:CYS97 3.5 1.0 1.0
HB2 A:HIS119 3.5 1.0 1.0
CB A:CYS100 3.5 1.0 1.0
H A:CYS100 3.6 1.0 1.0
HD2 A:HIS113 3.6 1.0 1.0
HB2 A:CYS97 3.7 1.0 1.0
CB A:HIS119 3.7 1.0 1.0
CA A:HIS119 3.9 1.0 1.0
N A:CYS100 4.1 1.0 1.0
ND1 A:HIS113 4.1 1.0 1.0
HZ A:PHE104 4.2 1.0 1.0
NE2 A:HIS119 4.2 1.0 1.0
HB3 A:CYS100 4.3 1.0 1.0
CG A:HIS113 4.3 1.0 1.0
CD2 A:HIS119 4.3 1.0 1.0
HB2 A:ASN122 4.4 1.0 1.0
CB A:VAL99 4.5 1.0 1.0
CA A:CYS100 4.5 1.0 1.0
CE1 A:TYR114 4.6 1.0 1.0
HE1 A:TYR114 4.6 1.0 1.0
HE2 A:MET102 4.7 1.0 1.0
HA A:TYR114 4.8 1.0 1.0
HB3 A:HIS119 4.8 1.0 1.0
N A:HIS119 4.8 1.0 1.0
H A:VAL99 4.8 1.0 1.0
CA A:CYS97 4.8 1.0 1.0
CD1 A:TYR114 4.9 1.0 1.0
CZ A:TYR114 4.9 1.0 1.0
O A:HIS119 4.9 1.0 1.0
C A:HIS119 4.9 1.0 1.0
C A:VAL99 4.9 1.0 1.0

Reference:

H.M.Moller, M.A.Martinez-Yamout, H.J.Dyson, P.E.Wright. Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double-Stranded Rna-Binding Protein Zfa J.Mol.Biol. V. 351 718 2005.
ISSN: ISSN 0022-2836
PubMed: 16051273
DOI: 10.1016/J.JMB.2005.06.032
Page generated: Wed Aug 20 00:58:55 2025

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