Zinc in PDB 1x5w: Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2

The binding sites of Zinc atom in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 (pdb code 1x5w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2, PDB code: 1x5w:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 NE2 A:HIS32 2.3 0.0 1.0 SG A:CYS15 2.3 0.0 1.0 SG A:CYS12 2.3 0.0 1.0 NE2 A:HIS28 2.3 0.0 1.0 H A:CYS15 2.9 0.0 1.0 HB2 A:GLU14 2.9 0.0 1.0 CE1 A:HIS28 3.1 0.0 1.0 HB3 A:TYR17 3.1 0.0 1.0 HE1 A:HIS28 3.1 0.0 1.0 HB3 A:CYS12 3.2 0.0 1.0 CD2 A:HIS32 3.3 0.0 1.0 CB A:CYS12 3.3 0.0 1.0 CE1 A:HIS32 3.3 0.0 1.0 CD2 A:HIS28 3.4 0.0 1.0 HD2 A:HIS32 3.5 0.0 1.0 HB2 A:CYS12 3.5 0.0 1.0 CB A:CYS15 3.5 0.0 1.0 HB3 A:CYS15 3.5 0.0 1.0 N A:CYS15 3.5 0.0 1.0 HE1 A:HIS32 3.5 0.0 1.0 HD2 A:HIS28 3.8 0.0 1.0 CB A:GLU14 3.9 0.0 1.0 HG23 A:ILE31 4.0 0.0 1.0 CA A:CYS15 4.0 0.0 1.0 HB2 A:TYR17 4.0 0.0 1.0 CB A:TYR17 4.1 0.0 1.0 HG22 A:ILE31 4.1 0.0 1.0 H A:TYR17 4.2 0.0 1.0 HB3 A:GLU14 4.2 0.0 1.0 ND1 A:HIS28 4.2 0.0 1.0 H A:GLU14 4.3 0.0 1.0 HA A:GLU29 4.4 0.0 1.0 HB2 A:CYS15 4.4 0.0 1.0 C A:GLU14 4.4 0.0 1.0 ND1 A:HIS32 4.4 0.0 1.0 CG2 A:ILE31 4.4 0.0 1.0 CG A:HIS28 4.4 0.0 1.0 CG A:HIS32 4.5 0.0 1.0 C A:CYS15 4.5 0.0 1.0 HG21 A:ILE31 4.5 0.0 1.0 O A:CYS15 4.5 0.0 1.0 CA A:GLU14 4.6 0.0 1.0 CA A:CYS12 4.7 0.0 1.0 N A:GLU14 4.7 0.0 1.0 CG A:TYR17 4.9 0.0 1.0 HG3 A:GLU14 4.9 0.0 1.0 HD1 A:TYR17 4.9 0.0 1.0 N A:TYR17 4.9 0.0 1.0 CG A:GLU14 4.9 0.0 1.0 HA A:CYS15 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS40 2.3 0.0 1.0 NE2 A:HIS56 2.3 0.0 1.0 NE2 A:HIS61 2.4 0.0 1.0 SG A:CYS43 2.4 0.0 1.0 H A:CYS43 2.6 0.0 1.0 HD2 A:HIS61 2.9 0.0 1.0 CD2 A:HIS61 3.0 0.0 1.0 HB2 A:TYR42 3.1 0.0 1.0 HB3 A:PHE45 3.2 0.0 1.0 CE1 A:HIS56 3.2 0.0 1.0 HB3 A:CYS43 3.2 0.0 1.0 CB A:CYS43 3.3 0.0 1.0 HE1 A:HIS56 3.3 0.0 1.0 N A:CYS43 3.4 0.0 1.0 CB A:CYS40 3.4 0.0 1.0 CD2 A:HIS56 3.4 0.0 1.0 HB3 A:CYS40 3.4 0.0 1.0 HB2 A:CYS40 3.5 0.0 1.0 CE1 A:HIS61 3.6 0.0 1.0 HD2 A:HIS56 3.7 0.0 1.0 HE1 A:MET57 3.8 0.0 1.0 CA A:CYS43 3.8 0.0 1.0 HE1 A:HIS61 4.0 0.0 1.0 HE2 A:MET57 4.0 0.0 1.0 HB2 A:PHE45 4.1 0.0 1.0 CB A:PHE45 4.1 0.0 1.0 H A:PHE45 4.1 0.0 1.0 H A:TYR42 4.1 0.0 1.0 CB A:TYR42 4.1 0.0 1.0 CG A:HIS61 4.3 0.0 1.0 HB2 A:CYS43 4.3 0.0 1.0 CE A:MET57 4.3 0.0 1.0 C A:CYS43 4.3 0.0 1.0 O A:CYS43 4.4 0.0 1.0 HB2 A:PHE60 4.4 0.0 1.0 ND1 A:HIS56 4.4 0.0 1.0 HB3 A:TYR42 4.4 0.0 1.0 C A:TYR42 4.4 0.0 1.0 HE3 A:MET57 4.5 0.0 1.0 ND1 A:HIS61 4.5 0.0 1.0 CG A:HIS56 4.5 0.0 1.0 CA A:TYR42 4.6 0.0 1.0 N A:TYR42 4.7 0.0 1.0 HD2 A:PHE45 4.7 0.0 1.0 HA A:MET57 4.8 0.0 1.0 CA A:CYS40 4.8 0.0 1.0 HA A:CYS43 4.8 0.0 1.0 N A:PHE45 4.9 0.0 1.0 HD1 A:TYR42 4.9 0.0 1.0 H A:ASN41 4.9 0.0 1.0 CG A:PHE45 4.9 0.0 1.0

M.Yoneyama, S.Koshiba, N.Tochio, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the C2H2 Type Zinc-Binding Domain of Human Zinc Finger Protein 64, Isoforms 1 and 2 To Be Published.