Zinc in PDB, part 340 (files: 13561-13600),
PDB 5xxj-5ybg
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 13561-13600 (PDB 5xxj-5ybg).
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5xxj (Zn: 3) - Crystal Structure of SMYD3 in Complex with Covalent Inhibitor 3
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5xyn (Zn: 1) - The Crystal Structure of CSM2-PSY3-SHU1-SHU2 Complex From Budding Yeast
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5xzb (Zn: 1) - Mouse Cgas Bound to the Inhibitor RU365
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5xze (Zn: 1) - Mouse Cgas Bound to the Inhibitor RU332
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5xzg (Zn: 1) - Mouse Cgas Bound to the Inhibitor RU521
Other atoms:
Cl (2);
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5xzi (Zn: 2) - Crystal Structure of the Zn-Directed Tetramer of the Engineered Cyt CB562 Variant, AB5
Other atoms:
Fe (1);
Cl (3);
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5xzj (Zn: 14) - Crystal Structure of the Zn-Directed Tetramer of the Engineered Cyt CB562 Variant, C96T/AB5
Other atoms:
Fe (4);
Cl (1);
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5y05 (Zn: 1) - Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis
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5y06 (Zn: 1) - Structural Characterization of MSMEG_4306 From Mycobacterium Smegmatis
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5y0u (Zn: 60) - The Solution Structure of AEBP2 C2H2 Zinc Fingers
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5y0z (Zn: 2) - Human SIRT2 in Complex with A Specific Inhibitor, NPD11033
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5y19 (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-((2S,3R)-3-Amino-2-Hydroxy-4-Phenylbutanamido)- N-Hydroxy- 4-Methylpentanamide.
Other atoms:
Mg (2);
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5y1h (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(2,4-Difluorobenzyl)Ureido)-N-Hydroxy-4- Methylpentanamide
Other atoms:
F (2);
Mg (3);
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5y1k (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(2-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide
Other atoms:
Mg (3);
Cl (1);
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5y1q (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3-Chlorobenzyl)Ureido)-N-Hydroxy-4-Methylpentanamide
Other atoms:
Mg (3);
Cl (1);
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5y1r (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-N-Hydroxy-4-Methyl-2-(3-( O-Tolyl)Ureido)Pentanamide
Other atoms:
Mg (3);
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5y1s (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(3,4-Dimethylbenzyl)Ureido)-N-Hydroxy-4- Methylpentanamide
Other atoms:
Mg (3);
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5y1t (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(2,3-Dimethylbenzyl)Ureido)-N-Hydroxy-4- Methylpentanamide
Other atoms:
Mg (3);
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5y1v (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-2-(3-(2,6-Diethylphenyl)Ureido)- N-Hydroxy-4- Methylpentanamide
Other atoms:
Mg (2);
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5y1w (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N with Magnesium Bound to Active Site Zinc
Other atoms:
Mg (3);
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5y1x (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with Actinonin
Other atoms:
Mg (1);
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5y1z (Zn: 6) - Crystal Structure of ZMYND8 Phd-Bromo-Pwwp Tandem in Complex with Drebrin Adf-H Domain
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5y20 (Zn: 2) - Crystal Structure of AL1 Phd Finger Bound to H3K4ME3
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5y2f (Zn: 1) - Human SIRT6 in Complex with Allosteric Activator Mdl-801
Other atoms:
F (1);
Br (1);
Cl (2);
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5y2r (Zn: 1) - 2.5 Atm CO2-Pressurized Human Carbonic Anhydrase II
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5y2s (Zn: 1) - 7.0 Atm CO2-Pressurized Human Carbonic Anhydrase II
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5y3e (Zn: 1) - Crystal Structure of Sars Coronavirus Papain-Like Protease in Complex with Glycerol
Other atoms:
Na (5);
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5y3i (Zn: 1) - Crystal Structure of Plasmodium Falciparum Aminopeptidase N in Complex with (S)-N-Hydroxy-4-Methyl-2-(3-(3-Methylbenzyl)Ureido)Pentanamide
Other atoms:
Mg (3);
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5y3q (Zn: 1) - Crystal Structure of Sars Coronavirus Papain-Like Protease Conjugated with Beta-Mercaptoethanol
Other atoms:
Na (5);
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5y46 (Zn: 2) - Crystal Structure of A Collagen-Like Peptide with Interruption Sequence
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5y4h (Zn: 1) - Human SIRT3 in Complex with Halistanol Sulfate
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5y4k (Zn: 1) - Crystal Structure of Dddy Mutant Y260A
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5y5b (Zn: 2) - Crystal Structure of Imp-1 Metallo-Beta-Lactamase
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5y5n (Zn: 1) - Crystal Structure of Human Sirtuin 2 in Complex with A Selective Inhibitor
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5y6d (Zn: 9) - Vim-2 Metallo-Beta-Lactamase in Complex with (R)-2-(4-Fluorophenyl)-2- ((S)-3-Mercapto-2-Methylpropanamido)Acetic Acid (Compound 11)
Other atoms:
F (4);
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5y6e (Zn: 6) - Vim-2 Metallo-Beta-Lactamase in Complex with (R)-2-(4-Hydroxyphenyl)- 2-((S)-3-Mercapto-2-Methylpropanamido)Acetic Acid (Compound 12)
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5y88 (Zn: 6) - Cryo-Em Structure of the Intron-Lariat Spliceosome Ready For Disassembly From S.Cerevisiae at 3.5 Angstrom
Other atoms:
Mg (6);
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5yat (Zn: 4) - Crystal Structure of Mitochondrial Alcohol Dehydrogenase Isozyme III From Komagataella Phaffii GS115
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5ybf (Zn: 10) - Crystal Structure of the GLUA2O Lbd in Complex with Glutamate and HBT1
Other atoms:
F (18);
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5ybg (Zn: 10) - Crystal Structure of the GLUA2O Lbd in Complex with Glutamate and LY451395
Page generated: Mon Dec 15 11:37:11 2025
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