Zinc in PDB, part 282 (files: 11241-11280),
PDB 5i02-5ife
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 11241-11280 (PDB 5i02-5ife).
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5i02 (Zn: 1) - Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex with 6- Amino-4-{2-[(Cyclohexylmethyl)Amino]Ethyl}-2-(Methylamino)-1,7- Dihydro-8H-Imidazo[4,5-G]Quinazolin-8-One
Other atoms:
Cl (1);
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5i03 (Zn: 1) - Trna-Guanine Transglycosylase (Tgt) in Co-Crystallized Complex with 6- Amino-4-[2-(4-Methylphenyl)Ethyl]-1,7-Dihydro-8H-Imidazo[4,5- G]Quinazolin-8-One
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5i06 (Zn: 1) - Trna-Guanine Transglycosylase (Tgt) in Co-Crystallized Complex with 6- Amino-4-[2-(4-Methoxyphenyl)Ethyl]-1,7-Dihydro-8H-Imidazo[4,5- G]Quinazolin-8-One
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5i07 (Zn: 2) - Trna Guanine Transglycosylase (Tgt) in Co-Crystallized Complex with 6- Amino-4-(2-Phenylethyl)-1,7-Dihydro-8H-Imidazo[4,5-G]Quinazolin-8-One
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5i09 (Zn: 1) - Trna Guanine Transglycosylase (Tgt) in Soaked Complex with Furanoside- Based Lin-Benzoguanine 3
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5i0l (Zn: 4) - Crystal Structure of the Catalytic Domain of Mmp-12 in Complex with A Selective Sugar-Conjugated Arylsulfonamide Carboxylate Water-Soluble Inhibitor (DC27).
Other atoms:
Ca (6);
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5i0p (Zn: 8) - Crystal Structure of A Beta-Lactamase Domain Protein From Burkholderia Ambifaria
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5i12 (Zn: 2) - Crystal Structure of the Catalytic Domain of Mmp-9 in Complex with A Selective Sugar-Conjugated Arylsulfonamide Carboxylate Water-Soluble Inhibitor (DC27).
Other atoms:
Ca (3);
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5i1r (Zn: 42) - Quantitative Characterization of Configurational Space Sampled By Hiv- 1 Nucleocapsid Using Solution uc(Nmr) and X-Ray Scattering
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5i1t (Zn: 1) - 2.6 Angstrom Resolution Crystal Structure of Stage II Sporulation Protein D (Spoiid) From Clostridium Difficile in Complex with Triacetylchitotriose
Other atoms:
Cl (1);
Na (1);
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5i2b (Zn: 1) - Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria with Actinonin
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5i2d (Zn: 4) - Crystal Structure of T. Thermophilus TTHB099 Class II Transcription Activation Complex: Tap-Rpo
Other atoms:
Mg (2);
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5i2r (Zn: 4) - Human PDE10A in Complex with 3-(2-Phenylpyrazol-3-Yl)-1-[3- (Trifluoromethoxy)Phenyl]Pyridazin-4-One
Other atoms:
F (12);
Mg (4);
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5i2z (Zn: 8) - Crystal Structure of the Catalytic Domain of Mmp-12 in Complex with A Selective Sugar-Conjugated Triazole-Linked Carboxylate Chelating Water-Soluble Inhibitor (DC24).
Other atoms:
Ca (12);
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5i3a (Zn: 5) - Crystal Structure of Tyrosinase From Bacillus Megaterium with Configuration A of Hydroquinone Inhibitor in the Active Site
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5i3b (Zn: 5) - Crystal Structure of Tyrosinase From Bacillus Megaterium with Configuration B of Hydroquinone Inhibitor in the Active Site
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5i3l (Zn: 8) - DPF3B in Complex with H3K14AC Peptide
Other atoms:
Na (1);
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5i3m (Zn: 8) - Crystal Structure of the Catalytic Domain of Mmp-12 in Complex with A Selective Sugar-Conjugated Thiourea-Linked Carboxylate Zinc-Chelator Water-Soluble Inhibitor (DC31).
Other atoms:
Ca (12);
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5i3p (Zn: 2) - Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Compound 27
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5i3q (Zn: 2) - Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound to Compound 29
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5i43 (Zn: 8) - Crystal Structure of the Catalytic Domain of Mmp-12 in Complex with A Selective Sugar-Conjugated Triazole-Linked Carboxylate Chelator Water-Soluble Inhibitor (DC32).
Other atoms:
Ca (12);
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5i49 (Zn: 1) - Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp Analog Umpnpp
Other atoms:
Mg (1);
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5i4j (Zn: 4) - DPS4 From Nostoc Punctiforme in Complex with Zn Ions
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5i4m (Zn: 4) - Crystal Structure of Amidase, Hydantoinase/Carbamoylase Family From Burkholderia Vietnamiensis
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5i4o (Zn: 8) - Crystal Structure of the Catalytic Domain of Mmp-12 in Complex with A Selective Sugar-Conjugated Triazole-Linked Carboxylate Zinc-Chelator Water-Soluble Inhibitor (DC28).
Other atoms:
Ca (12);
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5i72 (Zn: 4) - Crystal Structure of the Oligomeric Form of the Lassa Virus Matrix Protein Z
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5i7c (Zn: 2) - Centrosomin-Motif 2 (CM2) Domain of Drosophila Melanogaster Centrosomin (Cnn)
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5i81 (Zn: 2) - Asmase with Zinc
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5i85 (Zn: 2) - Asmase with Zinc and Phosphocholine
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5i8b (Zn: 3) - Cbp in Complex with CPD23 ((R)-6-(3-(Benzyloxy)Phenyl)-4-Methyl-1,3,4, 5-Tetrahydro-2H-Benzo[B][1,4]Diazepin-2-One)
Other atoms:
Na (1);
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5i8e (Zn: 10) - Crystal Structure of Broadly Neutralizing Hiv-1 Fusion Peptide- Targeting Antibody VRC34.01 Fab
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5i8g (Zn: 3) - Cbp in Complex with CPD637 ((R)-4-Methyl-6-(1-Methyl-3-(1-Methyl-1H- Pyrazol-4-Yl)-1H-Indazol-5-Yl)-1,3,4,5-Tetrahydro-2H-Benzo[B][1, 4]Diazepin-2-One)
Other atoms:
Na (1);
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5i8r (Zn: 6) - Asmase with Zinc
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5iaa (Zn: 2) - Crystal Structure of Human UBA5 in Complex with UFM1
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5ib9 (Zn: 6) - Crystal Structure of Aminopeptidase Equipped with Pad From Aneurinibacillus Sp. Am-1
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5ic5 (Zn: 3) - Bacteriophytochrome Response Regulator Rtbrr
Other atoms:
Mg (1);
As (1);
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5icn (Zn: 1) - HDAC1:MTA1 in Complex with Inositol-6-Phosphate and A Novel Peptide Inhibitor Based on Histone H4
Other atoms:
K (2);
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5ido (Zn: 1) - Rna Editing Tutase 1 From Trypanosoma Brucei in Complex with Utp
Other atoms:
Mg (1);
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5iea (Zn: 12) - TRIM5 B-BOX2 and Coiled-Coil Chimera
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5ife (Zn: 3) - Crystal Structure of the Human SF3B Core Complex
Other atoms:
K (1);
Page generated: Mon Dec 15 11:34:57 2025
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