Zinc in PDB, part 268 (files: 10681-10720),
PDB 5d1u-5dll
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 10681-10720 (PDB 5d1u-5dll).
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5d1u (Zn: 1) - Anthrax Toxin Lethal Factor with Hydroxamic Acid Inhibitor
Other atoms:
F (1);
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5d29 (Zn: 2) - X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Hydroxamate Inhibitor JHU241
Other atoms:
Cl (1);
Ca (1);
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5d2b (Zn: 2) - Crystal Structure of A Mutated Catalytic Domain of Human MMP12 in Complex with An Hydroxamate Analogue of RXP470
Other atoms:
Cl (2);
Ca (3);
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5d2r (Zn: 3) - Inhibitor Bound Cell Shape Determinant Protein CSD4 From Helicobacter Pylori
Other atoms:
I (19);
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5d3c (Zn: 2) - Crystal Structure of A Double Mutant Catalytic Domain of Human MMP12 in Complex with An Hydroxamate Analogue of RXP470
Other atoms:
Cl (1);
Ca (3);
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5d4c (Zn: 4) - Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with Atp and Ctp
Other atoms:
Mg (11);
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5d4d (Zn: 4) - Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with Nad and Ctp
Other atoms:
Mg (10);
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5d4e (Zn: 4) - Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Other atoms:
Mg (9);
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5d56 (Zn: 1) - In Meso in Situ Serial X-Ray Crystallography Structure of Diacylglycerol Kinase, Dgka, at 100 K
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5d5n (Zn: 1) - Crystal Structure of the Human Cytomegalovirus PUL50-PUL53 Complex
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5d7n (Zn: 6) - Crystal Structure of Human SIRT3 at An Improved Resolution
Other atoms:
Mg (1);
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5d7o (Zn: 2) - Crystal Structure of SIRT2-Adpr at An Improved Resolution
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5d7p (Zn: 2) - Crystal Structure of Human SIRT2 in Complex with Adpr and Ex-243
Other atoms:
Cl (4);
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5d7q (Zn: 2) - Crystal Structure of Human SIRT2 in Complex with Adpr and CHIC35
Other atoms:
Cl (4);
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5d7w (Zn: 1) - Crystal Structure of Serralysin
Other atoms:
Ca (7);
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5d88 (Zn: 1) - The Structure of the U32 Peptidase MK0906
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5d9y (Zn: 3) - Crystal Structure of TET2-5FC Complex
Other atoms:
Fe (1);
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5dag (Zn: 5) - Crystal Structure of Pzp Domain of Human AF10 Protein
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5dah (Zn: 10) - Crystal Structure of Pzp Domain of Human AF10 Protein Fused with Histone H3 Peptide
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5dc5 (Zn: 2) - Crystal Structure of D176N HDAC8 in Complex with M344
Other atoms:
K (2);
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5dc6 (Zn: 2) - Crystal Structure of D176N-Y306F HDAC8 in Complex with A Tetrapeptide Substrate
Other atoms:
K (2);
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5dc7 (Zn: 2) - Crystal Structure of D176A-Y306F HDAC8 in Complex with A Tetrapeptide Substrate
Other atoms:
K (2);
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5dc8 (Zn: 2) - Crystal Structure of H142A-Y306F HDAC8 in Complex with A Tetrapeptide Substrate
Other atoms:
K (4);
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5dcz (Zn: 1) - Tankyrase 2 Complexed with A Selective Inhibitor
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5deu (Zn: 3) - Crystal Structure of TET2-5HMC Complex
Other atoms:
Fe (1);
Cl (1);
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5dfa (Zn: 3) - 3D Structure of the E323A Catalytic Mutant of GAN42B, A GH42 Beta- Galactosidase From G. Stearothermophilus
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5dh4 (Zn: 2) - PDE10 Complexed with 5-Chloro-N-[(2,4-Dimethylthiazol-5-Yl) Methyl]Pyrazolo[1,5-A]Pyrimidin-7-Amine
Other atoms:
Mg (2);
Cl (2);
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5dh5 (Zn: 2) - PDE10 Complexed with N-[(1-Methylpyrazol-4-Yl)Methyl]-5-[[(1S,2S)-2- (2-Pyridyl)Cyclopropyl]Methoxy]Pyrazolo[1,5-A]Pyrimidin-7-Amine
Other atoms:
Mg (2);
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5dh8 (Zn: 13) - Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction- G12A Mutant in ZN2+
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5dhf (Zn: 1) - Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1
Other atoms:
Mg (1);
Cl (2);
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5di9 (Zn: 1) - Crystal Structure of HRIO2 Nes Reverse Mutant Peptide in Complex with CRM1-Ran-RANBP1
Other atoms:
Mg (1);
Cl (1);
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5din (Zn: 8) - Structural Basis For the Indispensable Role of A Unique Zinc Finger Motif in LNX2 Ubiquitination
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5diz (Zn: 2) - Crystal Structure of Nuclear Proteinaceous Rnase P 2 (PRORP2) From A. Thaliana
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5dk5 (Zn: 2) - Crystal Structure of Crn-4-Mes Complex
Other atoms:
Mg (2);
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5dka (Zn: 6) - A C2HC Zinc Finger Is Essential For the Activity of the Ring Ubiquitin Ligase RNF125
Other atoms:
Mg (1);
Cl (4);
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5dkc (Zn: 1) - Crystal Structure of the Bromodomain of Human Brm (SMARCA2) in Complex with Pfi-3 Chemical Probe
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5dkd (Zn: 2) - Crystal Structure of the Bromodomain of Human BRG1 (SMARCA4) in Complex with Pfi-3 Chemical Probe
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5dkh (Zn: 6) - Crystal Structure of the Bromodomain of Human Brm (SMARCA2) in Complex with A Hydroxyphenyl Propenone Inhibitor 17
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5dlh (Zn: 1) - Sfx Structure of Thermolysin
Other atoms:
Ca (4);
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5dll (Zn: 1) - Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4
Other atoms:
Cl (15);
Na (1);
Page generated: Mon Dec 15 11:34:25 2025
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