Zinc in PDB 9of1: Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map

All present enzymatic activity of Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map:
3.5.4.4;

The binding sites of Zinc atom in the Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map (pdb code 9of1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map, PDB code: 9of1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn701 b:89.1 occ:1.00 CE1 B:HIS461 2.0 51.8 1.0 NE2 B:HIS260 2.3 39.4 1.0 NE2 B:HIS461 2.3 56.0 1.0 NE2 B:HIS262 2.3 33.6 1.0 CE1 B:HIS260 2.7 31.1 1.0 ND1 B:HIS461 2.9 52.3 1.0 CE1 B:HIS262 2.9 37.9 1.0 OD1 B:ASP548 3.0 40.4 1.0 CD2 B:HIS461 3.3 55.1 1.0 CD2 B:HIS262 3.6 28.5 1.0 CG B:HIS461 3.6 52.9 1.0 CD2 B:HIS260 3.6 27.9 1.0 ND1 B:HIS260 4.0 23.6 1.0 ND1 B:HIS262 4.1 31.7 1.0 CG B:ASP548 4.1 40.5 1.0 NE2 B:HIS485 4.2 50.6 1.0 CG B:HIS260 4.4 24.5 1.0 CG B:HIS262 4.5 24.6 1.0 OD2 B:ASP548 4.6 47.1 1.0 NH1 B:ARG350 4.7 24.2 1.0 CB B:HIS461 4.9 52.8 1.0

Zinc binding site 2 out of 2 in the Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of CAD1 in Apo Form, Symmetry Expanded Dimer, Refined Against A Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn701 b:77.7 occ:1.00 NE2 D:HIS262 2.3 29.3 1.0 NE2 D:HIS260 2.3 23.9 1.0 NE2 D:HIS461 2.3 43.3 1.0 CE1 D:HIS260 2.9 24.5 1.0 CE1 D:HIS262 3.1 35.2 1.0 CE1 D:HIS461 3.2 43.6 1.0 CD2 D:HIS461 3.3 49.6 1.0 CD2 D:HIS262 3.3 25.0 1.0 OD1 D:ASP548 3.5 46.9 1.0 CD2 D:HIS260 3.5 24.0 1.0 CG D:ASP548 3.8 38.2 1.0 CB D:ASP548 4.0 31.0 1.0 ND1 D:HIS260 4.2 22.3 1.0 NE2 D:HIS485 4.2 45.2 1.0 ND1 D:HIS262 4.2 24.1 1.0 ND1 D:HIS461 4.3 47.1 1.0 CG D:HIS262 4.4 21.3 1.0 CG D:HIS461 4.4 51.7 1.0 OD2 D:ASP548 4.4 46.2 1.0 CG D:HIS260 4.5 24.1 1.0 CE1 D:HIS485 4.9 47.5 1.0 CA D:ASP548 4.9 30.2 1.0

Y.Zhao, H.Li. Sequential Conformational Activation of A Carf-Fused Adenosine Deaminase By Cyclic Oligoadenylates To Be Published.