Zinc in PDB 9n9s: Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex

The binding sites of Zinc atom in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex (pdb code 9n9s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex, PDB code: 9n9s:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn101 b:152.3 occ:1.00 CA C:CYS54 3.7 565.3 1.0 C C:CYS54 3.9 565.3 1.0 CA C:ALA18 4.1 606.0 1.0 HA C:CYS54 4.1 565.3 1.0 O C:CYS54 4.1 565.3 1.0 O C:ALA18 4.2 606.0 1.0 N C:PHE55 4.3 582.1 1.0 H C:PHE55 4.5 582.1 1.0 HA C:ALA18 4.5 606.0 1.0 C C:ALA18 4.6 606.0 1.0 HA C:PHE55 4.8 582.1 1.0 N C:CYS54 4.9 565.3 1.0 H C:CYS54 4.9 565.3 1.0 N C:ALA18 4.9 606.0 1.0 H C:ALA18 5.0 606.0 1.0

Zinc binding site 2 out of 4 in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn102 b:590.8 occ:1.00 HA C:PRO45 1.8 600.6 1.0 CA C:PRO45 2.4 600.6 1.0 H C:LEU46 3.1 577.8 1.0 N C:PRO45 3.4 600.6 1.0 C C:PRO45 3.6 600.6 1.0 N C:LEU46 3.6 577.8 1.0 O C:CYS44 3.8 622.7 1.0 C C:CYS44 4.0 622.7 1.0 O C:PRO45 4.7 600.6 1.0

Zinc binding site 3 out of 4 in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex within 5.0Å range:

Zinc binding site 4 out of 4 in the Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Model of Apc/C-CDC20-UBE2C From H3/H4-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn901 b:463.4 occ:1.00 H N:GLY223 2.7 541.6 1.0 H N:ALA222 3.2 545.1 1.0 H N:CYS233 3.2 657.0 1.0 HA N:CYS231 3.4 639.9 1.0 H N:TRP232 3.5 639.9 1.0 N N:GLY223 3.6 541.6 1.0 N N:ALA222 3.6 545.1 1.0 N N:CYS233 3.7 657.0 1.0 HA N:CYS221 3.8 600.3 1.0 CA N:CYS231 3.8 639.9 1.0 CA N:CYS221 3.9 600.3 1.0 N N:TRP232 3.9 639.9 1.0 C N:CYS221 4.0 600.3 1.0 CA N:CYS233 4.0 657.0 1.0 H N:CYS224 4.0 560.2 1.0 HA N:CYS233 4.1 657.0 1.0 N N:CYS224 4.2 560.2 1.0 C N:CYS231 4.3 639.9 1.0 CA N:GLY223 4.3 541.6 1.0 C N:GLY223 4.3 541.6 1.0 HA3 N:GLY223 4.4 541.6 1.0 CA N:ALA222 4.4 545.1 1.0 C N:ALA222 4.5 545.1 1.0 C N:TRP232 4.6 639.9 1.0 CA N:CYS224 4.8 560.2 1.0 CA N:TRP232 4.9 639.9 1.0 O N:CYS221 4.9 600.3 1.0 O N:GLY223 5.0 541.6 1.0

A.Skrajna, T.Bodrug, R.C.Martinez-Chacin, C.B.Fisher, K.A.Welsh, H.C.Simmons, E.C.Arteaga, J.M.Simmons, M.A.Nasr, K.M.Lapak, A.Nguyen, M.T.Huynh, I.Fargo, J.G.Welfare, Y.Zhao, D.S.Lawrence, D.Goldfarb, N.G.Brown, R.K.Mcginty. Apc/C-Mediated Ubiquitylation of Extranucleosomal Histone Complexes Lacking Canonical Degrons. Nat Commun V. 16 2561 2025.
ISSN: ESSN 2041-1723
PubMed: 40089476
DOI: 10.1038/S41467-025-57384-7