Zinc in PDB 9n9r: Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex

The binding sites of Zinc atom in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex (pdb code 9n9r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex, PDB code: 9n9r:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn101 b:440.2 occ:1.00 HA C:ILE60 3.3 644.5 1.0 HA C:CYS73 3.8 667.5 1.0 CA C:ILE60 4.3 644.5 1.0 O C:HIS72 4.6 636.1 1.0 O C:CYS59 4.7 646.1 1.0 CA C:CYS73 4.8 667.5 1.0 N C:ILE60 4.8 644.5 1.0 C C:CYS59 5.0 646.1 1.0

Zinc binding site 2 out of 4 in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn102 b:867.8 occ:1.00 HA C:HIS58 2.1 651.3 1.0 O C:MET57 2.1 628.8 1.0 C C:MET57 2.4 628.8 1.0 N C:HIS58 2.7 651.3 1.0 CA C:HIS58 2.7 651.3 1.0 H C:LEU61 3.3 648.0 1.0 H C:HIS58 3.3 651.3 1.0 CA C:MET57 3.5 628.8 1.0 C C:HIS58 3.7 651.3 1.0 O C:HIS58 3.9 651.3 1.0 HA C:MET57 4.0 628.8 1.0 N C:LEU61 4.1 648.0 1.0 CA C:LEU61 4.3 648.0 1.0 N C:MET57 4.6 628.8 1.0 N C:CYS59 4.7 646.1 1.0 HA C:LEU61 4.8 648.0 1.0 H C:CYS59 4.9 646.1 1.0 H C:ILE60 4.9 644.5 1.0 H C:LYS62 4.9 648.5 1.0 H C:MET57 4.9 628.8 1.0

Zinc binding site 3 out of 4 in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex within 5.0Å range:

Zinc binding site 4 out of 4 in the Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Model of Apc/C-CDC20-UBE2C From H2A/H2B-Bound Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn901 b:402.8 occ:1.00 O N:GLY223 3.7 527.7 1.0 CA N:GLU104 3.8 526.6 1.0 HA N:LEU176 3.8 533.3 1.0 HA N:GLU104 4.1 526.6 1.0 HA2 N:GLY223 4.2 527.7 1.0 H N:GLU104 4.4 526.6 1.0 C N:GLY223 4.5 527.7 1.0 C N:GLU104 4.5 526.6 1.0 CA N:CYS179 4.5 556.0 1.0 HA3 N:GLY223 4.5 527.7 1.0 N N:GLU104 4.7 526.6 1.0 CA N:GLY223 4.7 527.7 1.0 O N:ARG175 4.7 534.9 1.0 CA N:LEU176 4.8 533.3 1.0 H N:CYS179 4.9 556.0 1.0 HA N:CYS179 4.9 556.0 1.0 N N:PRO105 5.0 544.3 1.0 O N:LEU176 5.0 533.3 1.0

A.Skrajna, T.Bodrug, R.C.Martinez-Chacin, C.B.Fisher, K.A.Welsh, H.C.Simmons, E.C.Arteaga, J.M.Simmons, M.A.Nasr, K.M.Lapak, A.Nguyen, M.T.Huynh, I.Fargo, J.G.Welfare, Y.Zhao, D.S.Lawrence, D.Goldfarb, N.G.Brown, R.K.Mcginty. Apc/C-Mediated Ubiquitylation of Extranucleosomal Histone Complexes Lacking Canonical Degrons. Nat Commun V. 16 2561 2025.
ISSN: ESSN 2041-1723
PubMed: 40089476
DOI: 10.1038/S41467-025-57384-7